16 research outputs found

    Whole-genome sequencing reveals host factors underlying critical COVID-19

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    Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

    The composition of aquatic communities in saline wetlands in Western Australia

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    Macrophytes, plankton samples, salinity and depth data were collected from wetlands in October 1981. Species diversity and distributions are recorded and relationships drawn between macrophytes and plankton occurrence. An examination of the data of Geddes et al. (1981) enables comparisons of species composition in a similar range of Western Australian lakes in 1978 at a different stage in the seasonal cycle. Comparison with the biota of salt lakes in Australia's eastern states and elsewhere lead to biogeographical speculations for the macrophytes and for some of the planktonic species

    Rotifera from Western Australian wetlands with descriptions of two new species

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    The rotifer fauna of 100 fresh and saline wetlands of southwest Western Australia is documented. A systematic list of 83 recorded taxa is given, with eleven new records for the continent and two new species (Brachionus pinneenaus n. sp. and Lecane boorali n. sp.) described and figured. Species assemblages are distinct from those of eastern Australia, with predominant taxa halophilous or indicative of ephemeral waters. Evolutionary and biogeographical relationships of the Western Australian rotifers are considered

    Subclass Copepoda

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