Additional file 4: Table S5. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

IntronR-2nd dataset. (XLSX 203 kb

Additional file 6: Table S7. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

Exonic Intron-1st & 2nd datasets. (XLSX 43 kb

Additional file 9: Table S9. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

aJAS & Intronic intron-2nd dataset. (XLSX 74 kb

Additional file 3: Table S4. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

IntronR-1st dataset. (XLSX 125 kb

Additional file 1: Figure S1. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

Expression profile of the annotated protein-coding genes in the V. dahliae genome revealed by the 1st dataset. Figure S2. The V. dahliae non-coding regions could be enriched in secondary structures. Figure S3. Statistics of the TopHat junction reads. Figure S4. Overlap of the all AS genes. Figure S5. Mutually exclusive exons. Figure S6. Combinatory alternative splicing patterns for V. dahliae pre-mRNA alternative splicing. Figure S7. Representative of biological functions controlled by alternative splicing in the plant pathogen. Figure S8. Representative of biological functions controlled by alternative splicing in the plant pathogen. (DOCX 1433 kb

Additional file 8: Table S8. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

aJAS & Intronic intron-1st dataset. (XLSX 52 kb

Additional file 5: Table S6. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

Potential IR-induced PTCs for non-sense mediated decay. (XLSX 36 kb

Additional file 2: Table S1. of Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae

The genic distribution of two sets of transcriptome sequencing reads from the two V. dahliae strains. Table S2. Statistics of the expressed exons, introns and splice junctions (SJ) in the vegetative grown V. dahliae (1st dataset). Table S3. PCR Primers used in this study. (DOCX 32 kb