The Effects of High Concentrations of Ionic Liquid on GB1 Protein Structure and Dynamics Probed by High-Resolution Magic-Angle-Spinning NMR Spectroscopy

Ionic liquids have great potential in biological applications and biocatalysis, as some ionic liquids can stabilize proteins and enhance enzyme activity, while others have the opposite effect. However, on the molecular level, probing ionic liquid interactions with proteins, especially in solutions containing high concentrations of ionic liquids, has been challenging. In the present work the 13C, 15N-enriched GB1 model protein was used to demonstrate applicability of high-resolution magic-angle-spinning (HR-MAS) NMR spectroscopy to investigate ionic liquid–protein interactions. Effect of an ionic liquid (1-butyl-3- methylimidazolium bromide, [C4-mim]Br) on GB1was studied over a wide range of the ionic liquid concentrations (0.6–3.5 M, which corresponds to 10–60% v/v). Interactions between GB1 and [C4-mim]Br were observed from changes in the chemical shifts of the protein backbone as well as the changes in 15N ps-ns dynamics and rotational correlation times. Site-specific interactions between the protein and [C4-mim]Br were assigned using 3D methods under HR-MAS conditions. Thus, HR-MAS NMR is a viable tool that could aid in elucidation of molecular mechanisms of ionic liquid–protein interactions

Structural Changes of Zn(II)bleomycin Complexes When Bound to DNA Hairpins Containing the 5′-GT-3′ and 5′-GC-3′ Binding Sites, Studied through NMR Spectroscopy

We have previously investigated the diverse levels of disruption caused by Zn(II)BLMs with different C-termini to DNA hairpins containing 5′-GC-3′ and 5′-GT-3′ binding sites. The results of this investigation indicated that both the DNA-binding site and the bleomycin C-termini have an impact on the final conformation of the aforementioned hairpins in the drug-target complexes, as suggested by the different sets of intramolecular NOEs displayed by both oligonucleotides when bound to each Zn(II)BLM. The NMR signals elicited by 1H nuclei in the oligonucleotide bases and sugar moieties were also affected differently (shifted upfield or downfield in various patterns) depending on the BLM C-termini and the binding site in the oligonucleotides. The overall conclusion derived from the precedent research is that the spatial conformation of target DNA segments in DNA-Zn(II)BLM complexes could be forged by interactions between drug and DNA that are guided by the DNA binding site and the BLM C-termini. The present study focuses on the structural alterations exhibited by Zn(II)bleomycin-A2, -B2, -A5 and Zn(II)peplomycin molecules upon binding to the previously studied hairpins. Our main goal is to determine if different spatial conformations of the drugs in their DNA-bound forms are found in drug-DNA complexes that differ in the oligonucleotide binding site and BLM C-termini. Evidence that suggest that each Zn(II)bleomycin is structurally affected depending these two factors, as indicated by different sets of intramolecular NOE connectivities between drug protons and diverse patterns of shifting of their 1H-NMR signals, is provided

Reactions of Atomic Hydrogen with Formic Acid and Carbon Monoxide in Solid Parahydrogen I: Anomalous Effect of Temperature

Low-temperature condensed phase reactions of atomic hydrogen with closed-shell molecules have been studied in rare gas matrices as a way to generate unstable chemical intermediates and to study tunneling-driven chemistry. Although parahydrogen (pH₂) matrix isolation spectroscopy allows these reactions to be studied equally well, little is known about the analogous reactions conducted in a pH₂ matrix host. In this study, we present Fourier transform infrared (FTIR) spectroscopic studies of the 193 nm photoinduced chemistry of formic acid (HCOOH) isolated in a pH₂ matrix over the 1.7 to 4.3 K temperature range. Upon short-term irradiation the HCOOH readily undergoes photolysis to yield CO, CO₂, HOCO, HCO and H atoms. Furthermore, after photolysis at 1.9 K tunneling reactions between migrating H atoms and trapped HCOOH and CO continue to produce HOCO and HCO, respectively. A series of postphotolysis kinetic experiments at 1.9 K with varying photolysis conditions and initial HCOOH concentrations show the growth of HOCO consistently follows single exponential (<i>k</i> = 4.9(7)­x10^–3 min^–1) growth kinetics. The HCO growth kinetics is more complex displaying single exponential growth under certain conditions, but also biexponential growth at elevated CO concentrations and longer photolysis exposures. By varying the temperature after photolysis, we show the H atom reaction kinetics qualitatively change at ∼2.7 K; the reaction that produces HOCO stops at higher temperatures and is only observed at low temperature. We rationalize these results using a kinetic mechanism that involves formation of an H···HCOOH prereactive complex. This study clearly identifies anomalous temperature effects in the reaction kinetics of H atoms with HCOOH and CO in solid pH₂ that deserve further study and await full quantitative theoretical modeling