Duck cGAS inhibits DNA and RNA virus replication by activating IFNs and antiviral ISGs

Cyclic GMP-AMP Synthase (cGAS) is a pivotal adaptor of the signaling pathways involving the pattern recognition receptors and plays an important role in apoptosis and immune regulation. The cGAS function in mammals has been investigated extensively; however, the function of duck cGAS (du-cGAS) in response to viral infections is still unclear. This study aimed to clone the mallard (Anas platyrhynchos) cGAS homolog to investigate the function of duck cGAS (du-cGAS) in host antiviral innate immunity. The results showed that the open reading frame (ORF) region of the du-cGAS gene was 1296 bp, encoding 432 amino acids (aa) and exhibiting similar functional domains with its chicken counterpart. Knockdown of the endogenous du-cGAS by specific sgRNA strongly increased the replication of DNA viruses, including duck adenovirus B2 (DAdV B2) and duck short beak and dwarfism syndrome virus (SBDSV). However, the knockout did not impair the replication of novel duck reovirus (NDRV), an RNA virus. Furthermore, the mRNA expressions of type I interferon (IFNs) and vital interferon-stimulated genes (ISGs) were remarkably reduced in the du-cGAS knockout DEF cell line. Inversely, du-cGAS overexpression greatly activated the transcription of IFN-α, IFN-β, and vital ISGs, and impaired the replication of DAdV B2, SBDSV, and NDRV in the DEF cell line. Importantly, we found that a deletion of 68 aa in the N terminus didn’t impair the antiviral function of du-cGAS. Overexpressing NTase Core, C-Domain (Mab21), or Zinc-Ribbon domain independently had no antiviral effects. Generally, these results reveal that du-cGAS is a vital component of the innate immune system of ducks, with a universal antiviral activity, and provides a useful strategy for the control of waterfowl viral diseases

Segmentation and lateral growth of intracratonic strike-slip faults in the northern Tarim Basin, NW China: influences on Ordovician fault-controlled carbonate reservoirs

Intracratonic strike-slip faults have been recognized as a major factor controlling the formation of fracture-cave carbonate reservoirs in deep buried basins, yet which properties and how the strike-slip faults influence reservoir distribution and their connectivity are still ambiguous. This uncertainty significantly restricts hydrocarbon exploration and development, such as in the Fuman oilfield, northern Tarim Basin, NW China. Using a high-resolution 3D seismic reflection survey and borehole data, we investigated the geometry and kinematic evolution of the FI17 fault zone in the Fuman oilfield. This fault zone is characterized by a single fault zone, pop-up or pull-apart structures, right-stepping en echelon normal faults, and much smaller displacement (<30 m) normal fault arrays from bottom to top. The FI17 fault zone consists of four genetic segments, including the extensional strike-slip duplex, Riedel left-lateral shear, right-stepping horsetail splay, and horizontal slip segments in map view. In particular, the formation of the ∼18 km Riedel shear zone is characterized by the growth and linkage of segmented shear faults (synthetic and secondary synthetic shears). We observed that the large-scale fault-controlled fracture-cave reservoirs are distributed in positions with wider fault zones, which are characterized by overlapping of neighboring secondary shear faults. Furthermore, the reservoir width examined in this study is natural logarithmic correlated (positively) to the fault zone width. The reservoirs linked by the same shear faults show better internal connectivity. The spatial coherence between fault geometry and reservoir features indicates that segmentation and lateral growth of intracratonic strike-slip faults controls the occurrence of fracture-cave reservoirs, which may provide support for reservoir prediction in the Fuman oilfield and other deeply buried fault-controlled carbonate reservoirs in general

An Open Invitation to Join the International Brugada Electrocardiographic Indices Registry

Background: The Brugada Electrocardiographic Indices Registry is a comprehensive data registry composed of patients with Brugada patterns on the electrocardiogram (ECG). The aim is to test the hypotheses that (i) ECG indices combining both depolarization and repolarization abnormalities can better predict spontaneous ventricular arrhythmias than existing ECG markers in Brugada syndrome and (ii) that serial ECG measurements will provide additional information for risk stratification, especially in asymptomatic patients. Methods: Patients with both Brugada pattern ECGs and Brugada syndrome are eligible for inclusion in this registry. Baseline characteristics and ECG variables reflecting depolarization and repolarization will be determined. The primary outcome is spontaneous ventricular tachycardia/ventricular fibrillation or sudden cardiac death. Secondary outcomes are inducible ventricular tachycardia/ventricular fibrillation and syncope. Results: As of November 15, 2019, 39 investigators from 32 cities in 18 countries had joined this registry. As of December 15, 2019, 1383 cases had been enrolled. Conclusions: The Brugada Electrocardiographic Indices Registry will evaluate the disease life course, risk factors, and prognosis in a large series of Brugada patients. It will therefore provide insights for improving risk stratification

High-Grade B-cell Lymphoma, Not Otherwise Specified: A Multi-Institutional Retrospective Study

In this multi-institutional retrospective study, we examined the characteristics and outcomes of 160 patients with high-grade B-cell lymphoma, not otherwise specified (HGBL-NOS)-a rare category defined by high-grade morphologic features and lack of MYC rearrangements with BCL2 and/or BCL6 rearrangements ( double hit ). Our results show that HGBL-NOS tumors are heterogeneous: 83% of patients had a germinal center B-cell immunophenotype, 37% a dual-expressor immunophenotype (MYC and BCL2 expression), 28% MYC rearrangement, 13% BCL2 rearrangement, and 11% BCL6 rearrangement. Most patients presented with stage IV disease, a high serum lactate dehydrogenase, and other high-risk clinical factors. Most frequent first-line regimens included dose-adjusted cyclophosphamide, doxorubicin, vincristine, and etoposide, with rituximab and prednisone (DA-EPOCH-R; 43%); rituximab, cyclophosphamide, doxorubicin, vincristine, and prednisone (R-CHOP; 33%); or other intensive chemotherapy programs. We found no significant differences in the rates of complete response (CR), progression-free survival (PFS), or overall survival (OS) between these chemotherapy regimens. CR was attained by 69% of patients. PFS at 2 years was 55.2% and OS was 68.1%. In a multivariable model, the main prognostic factors for PFS and OS were poor performance status, lactate dehydrogenase \u3e3 × upper limit of normal, and a dual-expressor immunophenotype. Age \u3e60 years or presence of MYC rearrangement were not prognostic, but patients with TP53 alterations had a dismal PFS. Presence of MYC rearrangement was not predictive of better PFS in patients treated with DA-EPOCH-R vs R-CHOP. Improvements in the diagnostic criteria and therapeutic approaches beyond dose-intense chemotherapy are needed to overcome the unfavorable prognosis of patients with HGBL-NOS

The relationship between stock market and macroeconomic variables.

The relationship between stock market and macroeconomic variables

Three-dimensional carbonate reservoir geomodeling based on the digital outcrop model

To better know the spatial distribution and architecture of carbonate reservoirs, three-dimensional carbonate reservoir geologic modeling based on the digital outcrop model (DOM) is proposed. Based on the traditional geologic study of outcrops, combined with digitizing the outcrop walls by utilizing the advanced instrument (LIDAR, RTK-GPS, GPR, Gigapan, etc), DOM is built, from which geological information based on measured sections and samples (litho-facies, porosity, permeability, sonic velocity) is extracted and used to build the 3-D outcrop reservoir geologic model by modeling software. Eventually the 3-D reservoir geologic model of outcrop is used to guide the subsurface research. The DOM-based 3-D reservoir geologic model for oolitic reservoirs of Triassic Feixianguan Formation in Yudongliang outcrop, NW Sichuan Basin, reveals more realistic spatial distribution of litho-facies, porosity and permeability, and their relationship, consequently providing more reliable evidence for seismic data interpretation and reservoir prediction of subsurface reservoirs with similar geological conditions. Key words: digital outcrop model, carbonate reservoir, 3-D geologic modeling, Triassic Feixianguan Formation, oolitic beac

Inhibitory Effect of L-Methionine on <i>Alternaria alternata</i> Based on Metabolomics Analysis

Alternaria alternata is the main pathogenic fungus of postharvest black spots in fruits and vegetables. This study aimed to explore the antifungal activity of methionine on A. alternata in vitro and to reveal related antifungal mechanisms through a metabolomics analysis. The results showed that the inhibitory effects of L-methionine (Met) treatment on mycelium growth, spore germination, and the germ tube elongation of A. alternata were enhanced with an increase in the Met concentration, but the inhibitory effects decreased when the Met concentration was higher than 50 mmolL−1. The results of propidium iodide staining and scanning electron microscopy showed that the Met treatment damaged the plasma membrane integrity of the A. alternata spores and caused an irreversible deformation of mycelium. In addition, after the Met treatment, the leakage of electrolytes, nucleic acid, and proteins in the A. alternata cells was significantly higher than that in the control group, indicating that the Met treatment increased the permeability of the cell membranes. Eighty-one different metabolites, divided into seven categories, were identified through the metabolomics analysis, including forty-three downregulated metabolites and thirty-eight upregulated metabolites. Among them, these differential metabolites were mainly involved in amino acid synthesis and metabolism, the pentose phosphate pathway, and the TCA cycle. Therefore, the antifungal effect of the Met treatment on A. alternata was mainly to damage the integrity of the cell membranes, make nucleic acid and protein contents leak, and affect the TCA cycle, carbohydrate metabolism, amino acid synthesis metabolism, and the metabolic pathways associated with cell membrane biosynthesis. Thus, the growth and development of A. alternata were inhibited. The research enriched the investigation of the effect of the antifungal mechanism of Met treatment on A. alternata and provided a theoretical basis for the application of Met to prevent and treat postharvest black spots in fruits and vegetables

Influence of Water and Fertilizer Reduction on Sucrose Metabolism in Sugar Beets

Northern China faces water scarcity, restricting water usage in place across Inner Mongolia’s western region. The integrated irrigation and fertilization model for sugar beet is undergoing rapid development and application in production. However, there is a concerning trend in production where the frequency of irrigation and fertilization is being increased blindly, resulting in the wastage of valuable water and fertilizer resources. Limiting water and fertilizer usage is an effective approach to improve sugar beet production efficiency. Sugar beets are a significant sugar crop in China. A split-plot design was employed to examine the impact of reducing water and fertilizer use on sucrose metabolism in sugar beet root. Our study was performed at the Ulanqab Institute of Agricultural and Forestry Sciences in Inner Mongolia from 2022 to 2023. Three levels of fertilization and irrigation were utilized. We investigated the interactions between irrigation and fertilization on sucrose accumulation in sugar beet root. We examined key enzyme activities involved in sucrose metabolism alongside their gene expression levels. The findings suggested that reducing irrigation by 15%, fertilization by 10%, or both irrigation by 15% and fertilization by 10%, increased sucrose concentrations of sugar beets compared to the control group administered conventional water and fertilizer. Over the two-year period, the average sucrose concentration increased by 0.45, 0.57, and 0.65 degrees, respectively, under each treatment. Subsequent research verified that appropriately reducing water and fertilizer can regulate the expression of enzyme genes, thus influencing enzyme activity. Moreover, due to the higher efficiency of enzyme synthesis compared to decomposition, it contributed to an increase in net enzyme activity. These findings suggest that an appropriate reduction of water and fertilizer can improve sucrose synthesis rates and increase the sucrose concentration in sugar beets, providing a theoretical basis for environmentally friendly generation and enhanced efficiency in sugar beet growth

Inhibition Mechanism of Water-Soluble Chitosan–Curdlan Composite Coating on the Postharvest Pathogens of <i>Serratia marcescens</i> and <i>Pseudomonas syringae</i> in Cherry Tomatoes

Cherry tomatoes, a very popular fruit, are highly susceptible to microbial infestation, which cause significant economic losses. In order to preserve cherry tomatoes better, we treat them with a Chitosan (CTS) and Curdlan (CUR) composite coating. The lowest inhibitory concentration of CTS/CUR composite coating on Serratia marcescens and Pseudomonas syringae, the growth curves, and the changes of the cell lysis rate were determined to explore the inhibitory mechanism of CTS/CUR composite coating on Serratia marcescens and Pseudomonas syringae and the microscopic morphology of Serratia marcescens and Pseudomonas syringae was observed using scanning electron microscopy at the same time. The results showed that the CTS/CUR composite coating could effectively inhibit the growth of Serratia marcescens and Pseudomonas, and the inhibitory effect reflected the concentration-dependent characteristics. The electron microscopy results indicated that the inhibition of Serratia marcescens and Pseudomonas syringae by the CTS/CUR composite coating might originate from its disruptive effect on the cell wall and cell membrane of the bacterium

Analysis of proto-type Tarim Basin in the late Precambrian and the dynamic mechanism of its evolution.

Tarim Basin has undergone an intricate tectonic evolution history ever since its formation from two discrete terranes in Neoproterozoic rather than in the Paleoproterozoic. More precisely, the amalgamation is assumed to happen during 1.0-0.8 Ga based on plate affinity. As the beginning of a unified Tarim block, studies of Tarim Basin in the Precambrian are basic and important. After the amalgamation of south and north paleo-Tarim terranes, Tarim block was experiencing a complicated tectonic process of being affected by mantle plume related to the breakup of Rodinia supercontinent in the south, and compressed by the Circum-Rodinia Subduction System in the north. The breakup of Rodinia supercontinent finished in the late Sinian Period, leading Kudi Ocean and Altyn Ocean to open and separating Tarim block from itself. According to the residual strata thickness, drilling data, and lithofacies distribution, the proto-type basin and tectono-paleogeographic maps of Tarim Basin in the late Nanhua Period and Sinian Period are reconstructed. With these maps, the characteristics of the rifts are revealed. Two rift systems were developed inside the unified Tarim Basin in the Nanhua Period and Sinian Period, one back-arc rift system in the northern margin and the other aulacogen system in the southern margin. The azimuth distribution of the rifts in Quruqtagh showed a predominant NE-SW trend, and the rifts in Aksu trended mainly NW-SE, while the rifts in Tiekelike trended SW-NE. With a three-dimensional elastic FEM (Finite Element Method) model that includes all rifts and deposited areas in Tarim Basin, applying the southern subduction and northern mantle upwelling properly to get the paleotectonic mian stress axes and the differential stress field, the dynamic mechanisms of rifts evolution are proved to be related to the peripheral tectonic environment mentioned above