A-infinity structure on simplicial complexes

A discrete (finite-difference) analogue of differential forms is considered, defined on simplicial complexes, including triangulations of continuous manifolds. Various operations are explicitly defined on these forms, including exterior derivative and exterior product. The latter one is non-associative. Instead, as anticipated, it is a part of non-trivial A-infinity structure, involving a chain of poly-linear operations, constrained by nilpotency relation: (d + \wedge + m + ...)^n = 0 with n=2.Comment: final version. 29 page

POT1 proteins in green algae and land plants: DNA-binding properties and evidence of co-evolution with telomeric DNA

Telomeric DNA terminates with a single-stranded 3′ G-overhang that in vertebrates and fission yeast is bound by POT1 (Protection Of Telomeres). However, no in vitro telomeric DNA binding is associated with Arabidopsis POT1 paralogs. To further investigate POT1–DNA interaction in plants, we cloned POT1 genes from 11 plant species representing major branches of plant kingdom. Telomeric DNA binding was associated with POT1 proteins from the green alga Ostreococcus lucimarinus and two flowering plants, maize and Asparagus. Site-directed mutagenesis revealed that several residues critical for telomeric DNA recognition in vertebrates are functionally conserved in plant POT1 proteins. However, the plant proteins varied in their minimal DNA-binding sites and nucleotide recognition properties. Green alga POT1 exhibited a strong preference for the canonical plant telomere repeat sequence TTTAGGG with no detectable binding to hexanucleotide telomere repeat TTAGGG found in vertebrates and some plants, including Asparagus. In contrast, POT1 proteins from maize and Asparagus bound TTAGGG repeats with only slightly reduced affinity relative to the TTTAGGG sequence. We conclude that the nucleic acid binding site in plant POT1 proteins is evolving rapidly, and that the recent acquisition of TTAGGG telomere repeats in Asparagus appears to have co-evolved with changes in POT1 DNA sequence recognition

Glutamyl endopeptidase of bacillus intermedius, strain 3-19. purification, properties, cristallization

A homogeneous glutamyl endopeptidase, splitting peptide bonds of glutamic. rarely - of aspartic acid residues in peptides and proteins, was isolated from Bacillus intermedius 319 culture filtrate using chromatography on CM cellulose and Mono S. The enzyme molecular mass =29kDa. pI 8.4. The pro teinase is inhibited by I)FP. The enzyme, like other glutamyl endopeptidasos, reveals two pl[ optima at pH 7.5 and 9.0 for casein and one - at pH 8.0 for Z-Glu-pNA hydrolysis. K =6 mM was found for hydrolysis of the lat ter substrate. Its activity optimum lies at 55(;. The enzyme is stable at ptf 6.5-11.0. Its N-erminal sequence shows 56 per cent coinciding residues. when compared with that of Bacillus licheniformis glutamyl endopeptidase: VVIGDI) GRTKVA'NTRVAPYXXXXITFGGS-. The crystal prismesor plates of the size 0.23-0.3 x 0.15-0.2 x 0.07-0.1 mm have been grown using the vapour diffusion technique in lhe hanging drop followed by macroseeding. The crystals belong to the spat( group B2 with following unit cell parameters: a=69.59 angstrom; b=61.613 angstrom; c=56.107 angst rom; ,- 117.57. The x-ray data set to 1.7 angstrom resolution was collected on the synchrotron (EMBL Gain burg)

High pressures, low temperatures, and magnetic field effects on AgFeAsSe3 and AgFeSbSe3 properties

A procedure for synthesizing AgFeAsSe3 and AgFeSbSe3 is presented, and their electric and magnetic properties are investigated over a wide range of temperatures, pressures, and magnetic field variation. At 100-400K, the samples are characterized by semiconductor properties. Under pressures of ∼25 and ∼24 GPa, the electric properties of AgFeAsSe 3 and AgFeSbSe3 change greatly. © 2013 Allerton Press, Inc

Crystal growth and preliminary X-ray study of glutamic acid specific serine protease from Bacillus intermedius

The glutamic acid specific protease (glutamyl-endopeptidase) from Bacillus intermedius, strain 3-19, was isolated and purified using ion exchange chromatography on CM-cellulose and Mono-S FPLC column. The conditions for crystallization of the enzyme have been discussed. The crystals of enzyme were grown using hanging-drop vapor-diffusion technique. Crystals belong to the space group C2 with unit cell parameters of a = 61.62 Å, b = 55.84 Å, c = 60.40 Å, β = 117.6° X-ray diffraction data to 1.68 Å resolution were collected using synchrotron radiation (EMBL, Hamburg) and an imaging plate scanner. © 1999 Elsevier Science B.V. All rights reserved

Challenges of beta-deformation

A brief review of problems, arising in the study of the beta-deformation, also known as "refinement", which appears as a central difficult element in a number of related modern subjects: beta \neq 1 is responsible for deviation from free fermions in 2d conformal theories, from symmetric omega-backgrounds with epsilon_2 = - epsilon_1 in instanton sums in 4d SYM theories, from eigenvalue matrix models to beta-ensembles, from HOMFLY to super-polynomials in Chern-Simons theory, from quantum groups to elliptic and hyperbolic algebras etc. The main attention is paid to the context of AGT relation and its possible generalizations.Comment: 20 page

Glutamyl endopeptidase of Bacillus intermedius strain 3-19. Purification, properties, and crystallization

A homogeneous glutamyl endopeptidase splitting peptide bonds of glutamic and, rarely, of aspartic acid residues in peptides and proteins was isolated from Bacillus intermedius 3-19 culture filtrate using chromatography on CM-cellulose and Mono S. The enzyme molecular mass is 29 kD and the p/ is 8.4. The proteinase is inhibited by DFP. The enzyme, like other glutamyl endopeptidases, reveals two pH optima (pH 7.5 and 9.0) for casein and one (pH 8.0) for Z-Glu-pNA hydrolysis. The Km for the hydrolysis of the latter substrate is 6 mM. The enzyme activity is optimal at 55°C. The enzyme is stable in the pH range 6.5-11.0. Its N-terminal sequence shows 56% coinciding residues when compared with that of Bacillus licheniformis glutamyl endopeptidase. Crystal prisms or plates 0.25-0.3 × 0.15 × 0.07-0.1 mm have been grown using the vapor diffusion technique in a hanging drop followed by macroseeding. The crystals belong to the space group B2 with the following unit cell parameters: a = 69.59 Å; b = 61.61 Å; c = 56.11 Å; γ = 117.57°. The X-ray data set to 1.7 Å resolution has been collected on an automatic synchrotron (EMBL Hamburg Station)

Glutamyl endopeptidase of Bacillus intermedius, strain 3-19

A homogeneous glutamyl endopeptidase splitting peptide bonds of glutamic, rarely of aspartic acid residues in peptides and proteins, was isolated from Bacillus intermedius 3-19 culture filtrate using chromatography on CM cellulose and Mono S. The enzyme molecular mass is equal to 29 kDa, pI 8.4. The protease is inhibited by diisopropylfluorophosphate. The enzyme, like other glutamyl endopeptidases, reveals two pH optima at pH 7.5 and 9.0 for casein and one at pH 8.0 for Z-Glu-pNA hydrolysis. A 6 mM K(m) is found for hydrolysis of the latter substrate. The enzyme activity optimum lies at 55°C, and it is stable at pH 6.5-11.0. Its N-terminal sequence shows 56% coinciding residues when compared with that of Bacillus licheniformis glutamyl endopeptidase