Media 1: Coupling of spin and angular momentum of light in plasmonic vortex

Originally published in Optics Express on 23 April 2012 (oe-20-9-10083

Magnified views of some of the differentially expressed protein spots that correspond to the identified proteins.

<p>The protein spots that were identified using mass spectrometry are indicated by squares and labeled in the figure.</p

Responses induced by cadmium stress in morphological alterations in sorghum seedlings (A. Shoot length, B. Root length, C. Fresh weight, D. Relative water content) exposed to different concentrations of cadmium.

<p>Ten-day-old sorghum seedlings (BTX 623) were exposed to different concentrations of cadmium (0 μM, 100 μM, 150 μM CdCl₂) for 5 days. After 5 days of Cd stress, the leaves and roots were collected from both the control and Cd-treated seedlings. Prior to measuring morphological and physiological parameters, the seedlings were washed with de-ionized water. Three plants were randomly selected for measurements at each time point for each replicate, and the experiment was biologically replicated 3 times. Each bar represents the average ± SE for 3 plants. Significant differences between the control and the cadmium-induced seedlings were determined by performing a one-way analysis of variance (ANOVA) with Tukey’s all pairs of column comparison test. Asterisks indicate significant differences at <i>p</i> < 0.05.</p

Ion concentrations and cadmium accumulation in sorghum leaves (A. Cd²⁺, B. Zn²⁺, C. Ca²⁺, and D. Fe²⁺) exposed to cadmium stress.

<p>Ten-day-old sorghum seedlings (BTX 623) were exposed to different concentrations of cadmium (0 μM, 100 μM, 150 μM CdCl₂) for 5 days. Values (means ± SD) were determined for 3 independent experiments (n = 3).</p

A model of the putative subcellular localization of the leaf proteins identified in <i>S</i>. <i>bicolor</i> seedlings to be affected by exposure to Cd.

<p>The Cd-responsive proteins are indicated as follows: up-regulated proteins are indicated by “↑”, and down-regulated proteins are indicated by “↓”. The proteins were categorized with regard to their localization in cellular components using iProClass databases, and the assignment of functions was based on gene ontology.</p

Cluster analysis of cadmium-responsive leaf proteins.

<p>Ten-day-old sorghum seedlings were exposed to cadmium stress for 5 days. Samples from non-treated control plants and treated plants were collected on the same day. Differences in the intensity of labeling associated with the proteins in both the control and the cadmium-treated samples are shown as clusters. Any statistically significant difference (<i>p</i> < 0.05) in labeling intensity was considered to be positive. The protein spot numbers are indicated on the right side of the cluster. The clusters were determined using Genesis software (ver. 1.7.6).</p

Protein encoding gene functions of 33 differentially expressed proteins identified in the leaves of <i>S</i>. <i>bicolor</i>.

<p>The frequency distribution for the identified proteins within functional categories was determined based on their molecular functions (A), cellular localization (B), and their involvement in biological processes (C). Classifications were made using iProClass databases, and the assignment of functions was based on gene ontology.</p

Representative images of gels used in 2-DE analysis of <i>S</i>. <i>bicolor</i> leaves exposed to 0 μM, 100 μM and 150 μM CdCl₂.

<p>Leaf tissues were extracted using TCA-acetone precipitation method as described in the Materials and Methods section. Proteins were extracted from the leaves of 15-day-old seedlings that were treated with cadmium for 5 days. For IEF, 100 μg of proteins was loaded onto pH 3–10 NL IPG strips (7 cm). SDS-PAGE was performed on 12% gels, and the proteins were separated using 2-DE and then stained with silver staining. The differentially expressed protein spots (>1.5-fold difference) are indicated by circles on the 2-D gel map. These spots were found to be statistically significant at a level of 95% per group (Student’s <i>t</i>-test) using biological and analytical replicates (n = 3). The MW of each protein was determined using standard protein markers.</p

Cadmium distribution and fluorescence intensities in sorghum seedling leaves treated with dithizone staining.

<p>A. Control, B. 100 μM CdCl₂, C. 150 μM CdCl₂, D. Effect on the fluorescence intensity of cadmium-dithizone complexes. Samples obtained from different cadmium-treated leaves were placed on slides, mounted in mounting solution and observed using confocal microscopy (LSM 410; Carl Zeiss, Jena, Germany).</p

Schematic representation of the experimental setup used to compare Cd-treated sorghum seedlings with untreated plants (Control).

<p>The sorghum seedlings (BTX 623) were grown in growth chambers for 10 days in Hoagland solution. Ten-day-old sorghum seedlings were exposed to different concentrations of cadmium (0 μM, 100 μM, 150 μM CdCl₂) for 5 days. The samples were collected from the control and Cd-induced leaves for measurement of morphological and physiological parameters (shoot lengths, fresh weights, relative water content, confocal and ion analysis). For proteome analysis, leaves were excised, pooled, rinsed with de-ionized water, rapidly frozen in liquid nitrogen, and stored at -80°C. Molecular changes were investigated in <i>S</i>. <i>bicolor</i> using two-dimensional gel electrophoresis (2-DE) in samples derived from the leaves of both control and Cd-treated seedlings.</p