19 research outputs found

    Additional file 6: of In-depth resistome analysis by targeted metagenomics

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    MGC abundance comparison of biocide resistance between swine and human samples. Gene abundance was extracted from original count data after normalization. Some sets of genes make complex MGCs. In this representation, MGC quantification was discarded in order to increase the biological information. Genes were classified by compound susceptibility. Because some biocide resistance genes can confer different phenotypes (resistance to more than one compound), genes are not constricted to one category. Genetic abundance is expressed as reads per kilobase per million reads (RPKM). The right panel shows the results of MSS and the left panel shows the results of ResCap. (PDF 933 kb

    Examples of traits and their concordance in twins.

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    <p>MZ twin pair concordance for A) height, B) telomere length, C) IL6 receptor, D) IL6. In black the correlations for twins living apart, in red the correlations for twins living together. Values shown are sex and age corrected residuals (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0120898#sec002" target="_blank">Methods</a>).</p

    Correlation of phenotypic profiles across twins, spouses and unrelated individuals.

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    <p>This boxplot shows the pairwise correlations of phenotypic profiles between individuals: cohabiting MZ twins (57 pairs), MZ twins living apart (153 pairs), twin-spouse pairs (64 pairs) and non-related individuals (132596 pairs).</p

    Trait similarity across twins, spouses and unrelated individuals.

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    <p>This figure shows the boxplot with distribution across the 51 measured traits showing correlation in twins (cohabiting and not co-habiting), twin-spouse pairs and unrelated individuals. Average within pair correlation for the MZ twins living together is 0.56 (living together), for MZ twins living apart 0.48 (living apart), for twin-spouse pairs 0.08 and for non-related individuals 0.</p

    Pair-wise correlations (confidence intervals are provided in S2 Table) for each trait in each of the four comparison groups (MZ twin pairs living together, MZ twin pairs living apart, twin-spouse pairs, unrelated individuals) ordered by concordance in twins living together.

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    <p>Significant p-values (p < 0.001) are denoted with a *.</p><p>Pair-wise correlations (confidence intervals are provided in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0120898#pone.0120898.s004" target="_blank">S2 Table</a>) for each trait in each of the four comparison groups (MZ twin pairs living together, MZ twin pairs living apart, twin-spouse pairs, unrelated individuals) ordered by concordance in twins living together.</p
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