Carbon investment into mobilization of mineral and organic phosphorus by arbuscular mycorrhiza

To overcome phosphorus (P) deficiency, about 80% of plant species establish symbiosis with arbuscular mycorrhizal fungi (AMF), which in return constitute a major sink of photosynthates. Information on whether plant carbon (C) allocation towards AMF increases with declining availability of the P source is limited. We offered orthophosphate (OP), apatite (AP), or phytic acid (PA) as the only P source available to arbuscular mycorrhiza (AM) (Solanum lycopersicum x Rhizophagus irregularis) in a mesocosm experiment, where the fungi had exclusive access to each P source. After exposure, we determined P contents in the plant, related these to the overall C budget of the system, including the organic C (OC) contents, the respired CO2, the phospholipid fatty acid (PLFA) 16:1ω5c (extraradical mycelium), and the neutral fatty acid (NLFA) 16:1ω5c (energy storage) at the fungal compartment. Arbuscular mycorrhizal (AM) plants incorporated P derived from the three P sources through the mycorrhizal pathway, but did this with differing C-P trading costs. The mobilization of PA and AP by the AM plant entailed larger mycelium infrastructure and significantly larger respiratory losses of CO2, in comparison with the utilization of the readily soluble OP. Our study thus suggests that AM plants invest larger C amounts into their fungal partners at lower P availability. This larger C flux to the AM fungi might also lead to larger soil organic C contents, in the course of forming larger AM biomass under P-limiting conditions. © 2020, The Author(s)

Designing a Robust and Versatile System to Investigate Nutrient Exchange in, and Partitioning by, Mycorrhiza (Populus x canesces x Paxillus involutus) Under Axenic or Greenhouse Conditions

Phosphorus (P) bioavailability affects plant nutrition. P can be present in soils in different chemical forms that are not available for direct plant uptake and have to be acquired by different mechanisms, representing different resource niches. These mechanisms, of which many seem to be attributed to mycorrhiza, likely influence the diversity and stability of plant communities in natural ecosystems, as they also might help to overcome a future shortage of P supply in agro-ecosystems. In order to understand the mechanisms of P acquisition, the associated carbon costs, and the resource partitioning by mycorrhizal fungi, the ecosystem situation has to be mimicked in smaller scaled experiments. Here, different experimental setups are evaluated using plantlets of Populus x canescens and its functional ectomycorrhizal (ECM) fungus Paxillus involututs strain MAJ. To investigate resource partitioning involving mycorrhizae, the protocols of this study describe preparation of an in vitro and a rhizotrone culture systems for studies under axenic conditions as well as a mesocosm culture system for greenhouse conditions. We also describe the construction of separate compartments containing nutrients and excluding plant roots as well as the progress that has been made in in vitro propagation of plant and ECM fungal material. The practical experience made in our study shows that the in vitro culture system is prone to desiccation and its construction and maintenance are more time consuming and complicated. In contrast, with the axenic rhizotrone culture system and the mesocosms we have created more robust and very versatile systems that are also suitable for greenhouse conditions

Effect of salt stress on aerobic methane oxidation and associated methanotrophs; a microcosm study of a natural community from a non-saline environment

We investigated the response of aerobic methane oxidation and the associated methanotrophs to salt-stress in a NaCl gradient ranging from 0 M (un-amended reference) to 0.6 M NaCl (seawater salinity) using a rice paddy soil as a model system. Salt-stress significantly inhibited methanotrophic activity at > 0.3 M NaCl at 0.6 M NaCl amendment, methanotrophic activity fully ceased. MiSeq sequencing of the pmoA gene and group-specific qPCR analyses revealed that type Ia methanotroph (Methylobacter) appeared to be favored under salinity up to 0.3 M NaCl, increasing in numerical abundance, while the type Ib was adversely affected. This suggests niche differentiation within members of the gammaproteobacterial methanotrophs. Overall, rice paddy soil methanotrophs showed remarkable resistance to salt-stress

Mycorrhizal Mediated Partitioning of Phosphorus: Ectomycorrhizal (Populus x canescens x Paxillus involutus) Potential to Exploit Simultaneously Organic and Mineral Phosphorus Sources

Many natural and anthropogenic soils are phosphorus (P) limited often due to larger P stocks sequestered in forms of low bioavailability. One of the strategies to overcome this shortage lies in the symbiosis of plants with mycorrhizal fungi, increasing the plant P uptake of these hardly accessible sources. However, little is known about mycorrhizal fungal mediated partitioning of differently available P forms, which could contribute to more efficient use of P by plants and, thereby, reduce competition for soil P. This study aimed to investigate the uptake of P from differently bioavailable P sources by ectomycorrhiza. For that, we conducted a rhizotrone study using Populus x canescens and its compatible ectomycorrhizal fungus Paxillus involutus. Four different P sources [ortho-phosphate (oP), adenosine monophosphate (AMP), hydroxyapatite (HAP), and oP bound to goethite (gP)] or only HAP as 1P control were supplied in separate compartments, where only the fungal partner had access to the P sources. The amount of the specific P sources was increased according to their decreasing bioavailability. In order to distinguish between the P sources, we applied 33P to track its incorporation in plants by a non-destructive analysis via digital autoradiography. Our results show that an ectomycorrhizal plant is able to utilize all provided P sources via its mycorrhizal fungal associate. The acquisition timing was determined by the most bioavailable P sources, with oP and AMP over HAP and gP, and a mixed P pool over a single P source. In contrast, the magnitude was defined by the by the amount of supplied P source provision of additional nitrogen, hence AMP over oP and gP, as well as by P source complexity, with gP as the least favorable P form. Nevertheless, the results of the present study provide evidence that an ectomycorrhiza has the potential to occupy fundamental niches of various P sources differing in their bioavailability, indicating that being a generalist in P nutrition can facilitate adaptation to various nutritional settings in soil

Rapid remediation of sandy sulfuric subsoils using straw-derived dissolved organic matter

When acid sulfate soils dry, oxidation of pyrite can cause acidification and formation of iron (Fe) oxyhydroxy sulfate phases such as jarosite. Remediation via re-establishment of reducing conditions requires submergence and addition of biodegradable organic carbon (OC) to stimulate activity of reducing bacteria. Addition of fresh plant litter has been shown to activate reducing bacteria, likely due to the release of readily available soluble organic matter. However, the effectiveness of soluble organic matter from plant residues has not been tested yet. Here, we tested the potential of wheat straw-derived dissolved OC (DOC) for remediation of a sandy sulfuric (pH < 4) soil. In a second set of experiments, we used combinations of wheat straw-derived DOC with lactate, which is a preferred substrate of sulfate reducing bacteria. All incubation experiments were conducted in the dark at 20 °C. The results showed that addition of DOC from wheat straw induces reduction reactions and rapidly increases the pH by 2–3 units after 3 weeks of incubation under submerged conditions. Mössbauer spectroscopy and X-ray diffraction revealed that jarosite was lost after 200 days of anoxic incubation. Short range-ordered FeIII oxyhydroxides were formed, most likely by FeII-catalysed transformation of jarosite. A second addition of DOC, as well as the addition of lactate, resulted in the almost complete loss of jarosite with increased proportions of FeIII oxyhydroxides in the remaining solids, but not in the formation of FeII sulfides. The formation of FeIII oxyhydroxides reduces the risk of both Fe leaching and renewed acidification in the event of future oxidation. The results suggest that deep injection of wheat straw-derived DOC is a promising approach for rapid and sustainable remediation of sandy sulfuric subsoils. © 2022 The Author

Potential denitrification stimulated by water-soluble organic carbon from plant residues during initial decomposition

Denitrification usually takes place under anoxic conditions and over short periods of time, and depends on readily available nitrate and carbon sources. Variations in CO2 and N2O emissions associated with plant residues have mainly been explained by differences in their decomposability. A factor rarely considered so far is water-extractable organic matter (WEOM) released to the soil during residue decomposition. Here, we examined the potential effect of plant residues on denitrification with special emphasis on WEOM. A range of fresh and leached plant residues was characterized by elemental analyses, 13C-NMR spectroscopy, and extraction with ultrapure water. The obtained solutions were analyzed for the concentrations of organic carbon (OC) and organic nitrogen (ON), and by UV-VIS spectroscopy. To test the potential denitrification induced by plant residues or three different OM solutions, these carbon sources were added to soil suspensions and incubated for 24 h at 20 °C in the dark under anoxic conditions; KNO3 was added to ensure unlimited nitrate supply. Evolving N2O and CO2 were analyzed by gas chromatography, and acetylene inhibition was used to determine denitrification and its product ratio. The production of all gases, as well as the molar (N2O + N2)–N/CO2–C ratio, was directly related to the water-extractable OC (WEOC) content of the plant residues, and the WEOC increased with carboxylic/carbonyl C and decreasing OC/ON ratio of the plant residues. Incubation of OM solutions revealed that the molar (N2O + N2)–N/CO2–C ratio and share of N2O are influenced by the WEOM's chemical composition. In conclusion, our results emphasize the potential of WEOM in largely undecomposed plant residues to support short-term denitrification activity in a typical ˈhot spot–hot momentˈ situation

How temperature and aridity drive lignin decomposition along a latitudinal transect in western Siberia

Climate change drives a northward shift of biomes in high-latitude regions. This might have consequences on the decomposition of plant litter entering the soil, including its lignin component, which is one of the most abundant components of vascular plants. In order to elucidate the combined effect of climate and soil characteristics on the decomposition pattern of lignin, we investigated lignin contents and its degree of oxidative decomposition within soil profiles along a climosequence in western Siberia. Soil samples were collected from organic topsoil to mineral subsoil at six sites along a 1500-km latitudinal transect, stretching from tundra, through taiga and forest steppe to typical steppe. The stage of lignin degradation, as mirrored by decreasing organic carbon-normalized lignin contents and increasing oxidative alteration of the remnant lignin (acid-to-aldehyde ratios of vanillyl- and syringyl-units [(Ac/Al)V and (Ac/Al)S]) within soil horizons, increased from tundra to forest steppe and then decreased to the steppe. Principal component analysis, involving also climatic conditions such as mean annual temperature and aridity index, showed that the different states of lignin degradation between horizons related well to the activity of phenoloxidases and peroxidases, enzymes involved in lignin depolymerization that are produced primarily by fungi and less importantly by bacteria. The low microbial lignin decomposition in the tundra was likely due to low temperature and high soil moisture, which do not favour the fungi. Increasing temperature and decreasing soil moisture, facilitating a higher abundance of fungi, led to increased fungal lignin decomposition towards the forest-steppe biome, while drought and high pH might be responsible for the reduced lignin decomposition in the steppe. We infer that a shift of biomes to the north, driven by climate change, might promote lignin decomposition in the northern parts, whereas in the south a further retardation might be likely

Competition of Plants and Microorganisms for Added Nitrogen in Different Fertilizer Forms in a Semi-Arid Climate

In nitrogen (N) -limited agricultural systems, a high microbial immobilization of applied fertilizer-N can limit its availability to plants. However, there is scarce information on the effect of the form of fertilizer used on the plant–microorganism competition in clay-rich soils under a severe semi-arid climate. In a field study, we investigated the wheat–microorganism competition after the direct application of NH415NO3 closely to seeds in arable fields in North Kazakhstan, documenting the effect of the use of liquid versus granular fertilizer and mini-tillage versus no-tillage. Our results barely showed any fertilizer-N translocation in the soil. Plants outcompete microorganisms for fertilizer-N during the vegetation period. Microbial-to-plant 15N ratios revealed a predominant fertilizer-15N uptake by plants. The strong competition for N was mainly related to the placement of the fertilizer close to the seeds. Moreover, the long time interval between fertilization and sampling enhanced the competition for N, meaning that previously microbially immobilized N became available to plants through the death of microorganisms and their subsequent mineralization. The fertilizer distribution between microorganisms and plants did depend on the form of fertilizer used, owing to the good solubility of granular fertilizer. The smaller fertilizer-N uptake under the no-tilling condition was probably due to the more intense soil compaction, which caused a reduction in plant growth. The application of fertilizer close to the seeds and the small fertilizer translocation during the vegetation period ultimately resulted in a high level of plant N being derived from the fertilizer

Differences in labile soil organic matter explain potential denitrification and denitrifying communities in a long-term fertilization experiment

Content and quality of organic matter (OM) may strongly affect the denitrification potential of soils. In particular, the impact of soil OM fractions of differing bioavailability (soluble, particulate, and mineral-associated OM) on denitrification remains unresolved. We determined the potential N2O and N2 as well as CO2 production for samples of a Haplic Chernozem from six treatment plots (control, mineral N and NP, farmyard manure - FYM, and FYM + mineral N or NP) of the Static Fertilization Experiment Bad Lauchstädt (Germany) as related to OM properties and denitrifier gene abundances. Soil OM was analyzed for bulk chemical composition (13C-CPMAS NMR spectroscopy) as well as water-extractable, particulate, and mineral-associated fractions. Soils receiving FYM had more total OM and larger portions of labile fractions such as particulate and water-extractable OM. Incubations were run under anoxic conditions without nitrate limitation for seven days at 25 °C in the dark to determine the denitrification potential (N2O and N2) using the acetylene inhibition technique. Abundances of nirS, nirK, and nosZ (I + II) genes were analyzed before and after incubation. The denitrification potential, defined as the combined amount of N released as N2O + N2 over the experimental period, was larger for plots receiving FYM (25.9–27.2 mg N kg−1) than pure mineral fertilization (17.1–19.2 mg N kg−1) or no fertilization (12.6 mg N kg−1). The CO2 and N2O production were well related and up to three-fold larger for FYM-receiving soils than under pure mineral fertilization. The N2 production differed significantly only between all manured and non-manured soils. Nitrogenous gas emissions related most closely to water-extractable organic carbon (WEOC), which again related well to free particulate OM. The larger contribution of N2 production in soils without FYM application, and thus, with less readily decomposable OM, coincided with decreasing abundances of nirS genes (NO2− reductase) and increasing abundances of genes indicating complete denitrifying organisms (nosZ I) during anoxic conditions. Limited OM sources, thus, favored a microbial community more efficient in resource use. This study suggests that WEOC, representing readily bioavailable OM, is a straightforward indicator of the denitrification potential of soils