Maximum likelihood phylogeny of the representative rosids lineages.

<p>The common grape vine (<i>Vitis vinifera</i>) is included as the outgroup to root the tree. The concatenated alignment includes 62 conserved chloroplast genome genes and 54,689 aligned nucleotide sites. Nodes received <70% bootstrap support are indicated by gray arrows. The putative events of gene losses are inferred based on the most parsimonious scenario.</p

Chloroplast genome map of <i>Citrus aurantiifolia</i>.

<p>Gene drawn inside the circle are transcribed clockwise, whereas those outside are counterclockwise. The within-genome GC content variation is indicated in the middle circles.</p

List of long repeat sequences.

a<p>D: direct repeat; P: palindrome inverted repeat.</p>b<p>IGS: intergenic spacer region. Sequences conserved in the <i>C. sinensis</i> chloroplast genome are highlighted in bold.</p><p>List of long repeat sequences.</p

Differences between the <i>C. aurantiifolia</i> and <i>C. sinensis</i> cp genomes.

a<p>Relative to the length of <i>C. aurantiifolia.</i></p>b<p>Length in C. aurantiifolia.</p><p>Differences between the <i>C. aurantiifolia</i> and <i>C. sinensis</i> cp genomes.</p

Arabidopsis <i>rad23BCD</i> triple mutants do not exhibit symptoms of virescence or phyllody when infected with AY-WB.

<p>(A) Flowers produced from AY-WB–infected <i>rad23BD</i> mutants produce leaf-like flowers, whereas infected <i>rad23BCD</i> mutants grow flowers that resemble those of healthy plants. (B) Western blot analysis reveals that SEP3 is destabilized in <i>rad23BD</i> leaf-like flowers but not in <i>rad23BCD</i> flowers. SAP54 was detected in flowers harvested from AY-WB–infected <i>rad23</i> mutants but not healthy Arabidopsis plants. (C) The infection status of plants in panel A was confirmed using primers specific for AY-WB.</p

Phytoplasma SAP54 interacts with Arabidopsis RAD23 proteins.

<p>(A) SAP54 interacts with Arabidopsis RAD23C and RAD23D but not RAD23A or RAD23B isoforms in yeast two-hybrid assays. (B) RAD23C (44 kDa) and RAD23D (40 kDa) co-immunoprecipitate with GFP–SAP54 in samples obtained from transgenic Arabidopsis expressing <i>35S:GFP–SAP54</i>. We did not detect RAD23 following immunoprecipitation of GFP (in transgenic Arabidopsis expressing <i>35S:GFP</i>), nor did we detect an interaction with RAD23A or RAD23B in an Arabidopsis <i>rad23CD</i> double mutant. Equal loading of samples was verified via Bradford assays to confirm protein concentration. (C) Flowers produced from transgenic lines expressing <i>35S:GFP–SAP54</i> in wild-type (Col-0) and <i>rad23</i> mutant Arabidopsis lines indicate that SAP54-induced phyllody requires RAD23C and RAD23D. (D) Western blot analysis reveals GFP–SAP54 expression levels in rosette leaves harvested from plants in panel C. GFP–SAP54 is indicated by an arrow. AD, GAL4-activation domain; BD, GAL4–DNA binding domain; EV, empty vector control.</p

Phenotype scoring of <i>35S:GFP–SAP54</i> transgenic lines.

<p>Phenotype scoring of <i>35S:GFP–SAP54</i> transgenic lines.</p

Phytoplasma SAP54 interacts with and destabilizes MADS-box transcription factors in plants.

<p>(A) MTFs AP1 and SEP3 are destabilized in AY-WB–infected Arabidopsis lines. Flowers from healthy and phytoplasma-infected plants were harvested approximately 4 wk postinoculation. (B) MTFs are destabilized when expressed in the presence of SAP54. 10xmyc-tagged MTFs were transiently co-expressed with flag-tagged SAP54 or an RFP control in agroinfiltrated <i>N. benthamiana</i> leaves. (C) SAP54-mediated destabilization of AP1 is inhibited by epoxomicin. Infiltrated tissues were treated with 50 µM epoxomicin (dissolved in DMSO) 8 h prior to harvest. (D) MTFs AP1, SEP3, and SOC1 co-immunoprecipitate with GFP-tagged SAP54. Co-immunoprecipitation experiments of these Type II MTFs were performed alongside Type I MTF AGL50, which was not detected. Proteins were transiently expressed in <i>N. benthamiana</i> in the presence or absence of 50 µM epoxomicin to stabilize MTFs.</p

Phytoplasma SAP54 interacts specifically with the Keratin-like (K) domain of selected Type II MADS-box transcription factors (MTFs).

<p>(A) A comprehensive yeast two-hybrid screen of 106 Arabidopsis MTFs reveals that SAP54 interacts with members of the Type II subfamily of MTFs (proteins that interact with SAP54 are indicated in red font). For simplicity, not all MTFs are included in the phylogenetic tree. (B) SAP54 interacts primarily with the K domain of AP1. AD, GAL4-activation domain; BD, GAL4-DNA binding domain; EV, empty vector control. (C) Flowers produced from healthy (left) and AY-WB–infected (right) Arabidopsis lines approximately 4 wk postinoculation. (D) SAP54 (indicated by an arrow) co-immunoprecipitates with SEP3–GFP but not FUL–GFP or AG–GFP. Flowers for immunoprecipitation experiments were harvested from transgenic lines pictured in panel C at an early point of infection (approximately 2 wk postinoculation) to minimize MTF loss due to destabilization. Equal loading of samples was confirmed via Bradford assays to quantify protein concentration.</p

Aster leafhopper <i>Macrosteles quadrilineatus</i> demonstrates oviposition preference for plants with leaf-like flowers.

<p>(A) <i>M. quadrilineatus</i> produces significantly more progeny on AY-WB–infected <i>rad23BD</i> mutants (leaf-like flower phenotype) compared to <i>rad23BCD</i> mutant plants (non-leaf-like flower phenotype) (<i>t</i>₍₅₎ = 4.7; <i>p</i> = 0.042). Insects do not exhibit a preference between healthy <i>rad23BD</i> and <i>rad23BCD</i> plants (<i>t</i>₍₅₎ = 0.45; <i>p</i> = 0.694). (B) <i>M. quadrilineatus</i> adults produce more nymphs on transgenic Arabidopsis expressing GFP-tagged SAP54 (leaf-like flowers) compared to GFP control plants (wild-type flowers) (<i>t</i>₍₇₎ = 6.45; <i>p</i> = 0.008). In these experiments, 10 male and 10 female <i>M. quadrilineatus</i> adults were released in a choice cage containing two test plants for the period of 5 d. After removal of adult insects, plants were bagged individually and incubated for 14 d to allow nymph emergence. The graphs in panel A and B represent the percentage of <i>M. quadrilineatus</i> nymphs found on each test plant within a single choice cage.</p