Metagenomic insight into precipitation processes in microbial communities from salar de Atacama

The Salar de Atacama is one of the Earth’s largest evaporite basins (ca. 3,000 km2). Within this large area, numerous hypersaline lakes can be found. These lakes are hotspots for microbial diversity, and diverse structures with associated microorganisms have been reported, including microbial mats, microbialites and endoevaporites. In this work, we aim to identify functional differences in the microbiota from these systems, using as models a mat from Brava lake, a microbialite from Chaxas and an endoevaporite from Barros Negros. Metagenomic DNA was extracted from these samples, and sequenced with Illumina technology. The datasets generated allowed to characterize the microbial communities both taxonomically and functionally.The carbonate-rich mats and microbialites are dominated by Proteobacteria, and within this phylum the most abundant classes are Alphaproteobacteria and Gammaproteobacteria. Other important phyla include Bacteroidetes, Cyanobacteria, and Actinobacteria. In the endoevaporites, the phyla are more evenly distributed, being Proteobacteria, Bacteroidetes, and Euryarchaeota similarly abundant, with Cyanobacteria and Actinobacteria also present. At the family level, the mat is the most diverse and the endoevaporite is the least diverse. This is also observed at the function level, with more pathways annotated in Brava. However, the main functional roles present in the three communities are similar, with Cyanobacteria being the main primary producers, involved in photosynthesis and nitrogen fixing, Alphaproteobacteria involved in anoxygenic photosynthesis, and Deltaproteobacteria involved in sulfur cycling. This work starts the exploration of the microbial influence on the formation of different macrostructures harboring microbial ecosystems in extreme environments from the Central Andes region. Certain taxa present only in the more lithified communities, and with metabolic pathways promoting precipitation might be particularly involved in the lithification process.Fil: Marcelino, Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Kurth, Daniel German. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaXVII Congreso Argentino de Microbiología GeneralLos CocosArgentinaSociedad Argentina de Microbiología Genera

Assessment of the plasmidome of an extremophilic microbial community from the Diamante Lake, Argentina

Diamante Lake located at 4589 m.a.s.l. in the Andean Puna constitutes an extreme environment. It is exposed to multiple extreme conditions such as an unusually high concentration of arsenic (over 300 mg L−1) and low oxygen pressure. Microorganisms thriving in the lake display specific genotypes that facilitate survival, which include at least a multitude of plasmid-encoded resistance traits. Hence, the genetic information provided by the plasmids essentially contributes to understand adaptation to different stressors. Though plasmids from cultivable organisms have already been analyzed to the sequence level, the impact of the entire plasmid-borne genetic information on such microbial ecosystem is not known. This study aims at assessing the plasmidome from Diamante Lake, which facilitates the identification of potential hosts and prediction of gene functions as well as the ecological impact of mobile genetic elements. The deep-sequencing analysis revealed a large fraction of previously unknown DNA sequences of which the majority encoded putative proteins of unknown function. Remarkably, functions related to the oxidative stress response, DNA repair, as well as arsenic- and antibiotic resistances were annotated. Additionally, all necessary capacities related to plasmid replication, mobilization and maintenance were detected. Sequences characteristic for megaplasmids and other already known plasmid-associated genes were identified as well. The study highlights the potential of the deep-sequencing approach specifically targeting plasmid populations as it allows to evaluate the ecological impact of plasmids from (cultivable and non-cultivable) microorganisms, thereby contributing to the understanding of the distribution of resistance factors within an extremophilic microbial community.Fil: Perez, María Florencia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Poehlein, Anja. Universität Göttingen; AlemaniaFil: Meinhardt, Friedhelm. Münster Universität; AlemaniaFil: Daniel, Rolf. Universität Göttingen; AlemaniaFil: Dib, Julian Rafael. Universidad Nacional de Tucumán; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

Los oncoides de las quínoas: Un nuevo depósito de microbialitos en el salar de antofalla (Catamarca, Argentina).

The Salar de Antofalla (salt flat) is located in the Puna region of Catamarca, in northern Argentina. In this paper we report and provide the first descriptive data of Las Quínoas, a modern system of oncoids located in the western margin of the salt flat. Oncoids were studied by insitu logging, polished and thin sections analysis. In addition, the 16s rRNA genes of microbial mats associated with these oncoids were amplified and sequenced to characterize the microbial biodiversity. Oncoids present discoidal to subrounded morphologies and sizes up to 15 cm in diameter. They are scattered along channels, which originate from the groundwater springs of a wetland and enter the salt flat. Its macrostructure is concentric and composed by three zones: 1. A nucleus zone built by clastic material in a carbonate matrix. 2. A well-laminated zone around the nucleus that shows two types of mesostructures: concentrically stacked spheroids (SS-C) and randomly stacked hemispheroids (SS-R), both showing an alternation of dense and dark micritic laminae with light micritic to microsparitic laminae. 3. A poorly-laminated zone, in the outermost sector of oncoids, with two types of mesostructures too: a laminated mesostructure composed also of an alternation of dense and dark micritic laminae with light micritic to microsparitic laminae, and a non-laminated mesostructure composed of agglomerated and cemented clastic material within a calcareous matrix (wackestones-packstones). Regarding the microbial diversity, the analyzed oncoids in this work are mainly inhabited by Proteobacteria (ca. 37.5%), Bacteroidetes (ca. 25.0%), and in less proportion Planctomycetes, Actinobacteria and Cyanobacteria.El salar de Antofalla se encuentra en la región de la Puna de Catamarca, en el norte de Argentina. En este artículo informamos y proporcionamos los primeros datos descriptivos de Las Quínoas, un sistema moderno de oncoides ubicado en el margen occidental de este salar. Ellos se estudiaron mediante registro in situ, análisis de secciones pulidas y delgadas. Además, los genes de ARNr 16s de tapices microbianos asociados con estos oncoides se amplificaron y secuenciaron para caracterizar la biodiversidad microbiana. Los oncoides presentan morfologías discoidales a subredondeadas y tamaños de hasta 15 cm de diámetro. Se encuentran dispersos a lo largo de canales, que se originan de las surgentes de agua de una vega y entran al salar. Su macroestructura es concéntrica y está compuesta por tres zonas: 1. Una zona de núcleo construida por material clástico en una matriz de carbonato. 2. Una zona bien laminada alrededor del núcleo que muestra dos tipos de mesoestructuras: esferoides concéntricamente apilados (SS-C) y hemisferoides apilados aleatoriamente (SS-R), ambos con una alternancia de láminas micríticas densas y oscuras con micríticas claras a microesparíticas. 3. Una zona pobremente laminada, en el sector más externo de los oncoides, también con dos tipos de mesoestructuras: una mesoestructura laminada compuesta por la alternancia de láminas micríticas densas y oscuras con láminas micríticas claras a microesparíticas, y una mesoestructura no laminada compuesta de material clástico aglomerado y cementado dentro de una matriz calcárea (wackestones-packstones). En cuanto a la diversidad microbiana, los oncoides analizados en este trabajo están habitados principalmente por Proteobacterias (ca. 37,5%), Bacteroidetes (ca. 25,0%), y en menor proporción Planctomicetes, Actinobacterias y Cianobacterias.Fil: Villafañe, Patricio Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Gómez, Fernando Javier. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Lencina, Agustina Inés. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro de Investigaciones y Transferencia de Catamarca. Universidad Nacional de Catamarca. Centro de Investigaciones y Transferencia de Catamarca; ArgentinaFil: Soria, Mariana Noelia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

Analysis of co-regulated abundance of genes associated with arsenic and phosphate metabolism in Andean Microbial Ecosystems

Phosphate and arsenate are very similar compounds, and there is great interest in studying their relationship and their interaction with biological systems. Despite having no apparent biological function, specific genes regulate arsenic interaction with cells and can be located in regions of the genome called arsenic islands, where phosphate metabolism genes are also present. Although they are neighboring genes, the nature of their relationship and how they have been selected is still unknown.In this work, we analyzed the metagenomes of the four microbial ecosystems inhabiting hypersaline lakes of the Argentine Puna and the Atacama salt flat in Chile and have evaluated the presence and abundance of both arsenic and phosphate metabolism genes. The samples analyzed included microbialites, biofilms and microbial mats; all of them established under high arsenic concentrations, high UV radiation and high temperature fluctuation, among others.The results show great differences in the dispersion and abundance of genes related to both phosphate and arsenic metabolism in the analyzed samples. The main difference is given in the Diamante Lake, located in the crater of the Galan volcano characterized by being one of the lakes with the highest arsenic concentration (2.34 mM). Correlating genes abundance with the physicochemical parameters of the lakes studied, our results suggest that arsenic and phosphate metabolism are intricately co-regulated in environmental conditions.Fil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Valenzuela Diaz, Sandro. Universidad Andrés Bello; ChileFil: Kurth, Daniel German. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Contreras, Emanuel. Centro de Ecologia Aplocada Ltda; ChileFil: Meneses, Claudio. Center For Genome Regulation; ChileFil: Castro Nallar, Eduardo. Universidad Andrés Bello; ChileFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

Phosphate-Arsenic Interactions in Halophilic Microorganisms of the Microbial Mat from Laguna Tebenquiche: from the Microenvironment to the Genomes

Arsenic (As) is a metalloid present in the earth’s crust and widely distributed in the environment. Due to its high concentrations in the Andean valleys and its chemical similarity with phosphorus (P), its biological role in Andean Microbial Ecosystems (AMEs) has begun to be studied. The AMEs are home to extremophilic microbial communities that form microbial mats, evaporites, and microbialites inhabiting Andean lakes, puquios, or salt flats. In this work, we characterize the biological role of As and the effect of phosphate in AMEs from the Laguna Tebenquiche (Atacama Desert, Chile). Using micro X-ray fluorescence, the distribution of As in microbial mat samples was mapped. Taxonomic and inferred functional profiles were obtained from enriched cultures of microbial mats incubated under As stress and different phosphate conditions. Additionally, representative microorganisms highly resistant to As and able to grow under low phosphate concentration were isolated and studied physiologically. Finally, the genomes of the isolated Salicola sp. and Halorubrum sp. were sequenced to analyze genes related to both phosphate metabolism and As resistance. The results revealed As as a key component of the microbial mat ecosystem: (i) As was distributed across all sections of the microbial mat and represented a significant weight percentage of the mat (0.17 %) in comparison with P (0.40%); (ii) Low phosphate concentration drastically changed the microbial community in microbial mat samples incubated under high salinity and high As concentrations; (iii) Archaea and Bacteria isolated from the microbial mat were highly resistant to arsenate (up to 500 mM), even under low phosphate concentration; (iv) The genomes of the two isolates were predicted to contain key genes in As metabolism (aioAB and arsC/acr3) and the genes predicted to encode the phosphate-specific transport operon (pstSCAB-phoU) are next to the arsC gene, suggesting a functional relationship between these two elements.Fil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Soria, Mariana Noelia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Durán Toro, V.. Universitat Bremen; AlemaniaFil: Wörmer, L.. Universitat Bremen; AlemaniaFil: Milucka, J.. Max Planck In­sti­tute For Mar­ine Mi­cro­bi­o­logy; AlemaniaFil: Castro Nallar, E.. Universidad Andrés Bello; ChileFil: Meneses, C.. Universidad Andrés Bello; ChileFil: Contreras, M.. Centro de Ecologia Aplocada Ltda; ChileFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin

Lithifying and Non-Lithifying Microbial Ecosystems in the Wetlands and Salt Flats of the Central Andes

The wetlands and salt flats of the Central Andes region are unique extreme environments as they are located in high-altitude saline deserts, largely influenced by volcanic activity. Environmental factors, such as ultraviolet (UV) radiation, arsenic content, high salinity, low dissolved oxygen content, extreme daily temperature fluctuation, and oligotrophic conditions, resemble the early Earth and potentially extraterrestrial conditions. The discovery of modern microbialites and microbial mats in the Central Andes during the past decade has increased the interest in this area as an early Earth analog. In this work, we review the current state of knowledge of Central Andes region environments found within lakes, small ponds or puquios, and salt flats of Argentina, Chile, and Bolivia, many of them harboring a diverse range of microbial communities that we have termed Andean Microbial Ecosystems (AMEs). We have integrated the data recovered from all the known AMEs and compared their biogeochemistry and microbial diversity to achieve a better understanding of them and, consequently, facilitate their protection.Fil: Vignale, Federico Agustín. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Lencina, Agustina Inés. Universidad de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Stepanenko, Tatiana Mariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Soria, Mariana Noelia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saona Acuña, Luis Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Kurth, Daniel German. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Guzmán, Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Foster, Jamie Susan. Universidad Mayor de San Simon Bolivia; BoliviaFil: Poiré, Daniel G.. University of Florida; Estados UnidosFil: Villafañe, Patricio Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Albarracín, Virginia Helena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Contreras, Emanuel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Farias, Maria Eugenia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentin