8 research outputs found
Experimental and Calculated Spectra of ĻāStacked Mild Charge-Transfer Complexes: Jet-Cooled PeryleneĀ·(Tetrachloroethene)<sub><i>n</i></sub>, <i>n</i> = 1,2
The
S<sub>0</sub> ā S<sub>1</sub> spectra of the mild charge-transfer
(CT) complexes peryleneĀ·tetrachloroethene (PĀ·4ClE) and peryleneĀ·(tetrachloroethene)<sub>2</sub> (PĀ·(4ClE)<sub>2</sub>) are investigated by two-color
resonant two-photon ionization (2C-R2PI) and dispersed fluorescence
spectroscopy in supersonic jets. The S<sub>0</sub> ā S<sub>1</sub> vibrationless transitions of PĀ·4ClE and PĀ·(4ClE)<sub>2</sub> are shifted by Ī“Ī½ = ā451 and ā858
cm<sup>ā1</sup> relative to perylene, translating to excited-state
dissociation energy increases of 5.4 and 10.3 kJ/mol, respectively.
The red shift is ā¼30% larger than that of peryleneĀ·<i>trans</i>-1,2-dichloroethene; therefore, the increase in chlorination
increases the excited-state stabilization and CT character of the
interaction, but the electronic excitation remains largely confined
to the perylene moiety. The 2C-R2PI and fluorescence spectra of PĀ·4ClE
exhibit strong progressions in the perylene intramolecular twist (1a<sub>u</sub>) vibration (42 cm<sup>ā1</sup> in S<sub>0</sub> and
55 cm<sup>ā1</sup> in S<sub>1</sub>), signaling that perylene
deforms along its twist coordinate upon electronic excitation. The
intermolecular stretching (T<sub>z</sub>) and internal rotation (R<sub>c</sub>) vibrations are weak; therefore, the PĀ·4ClE intermolecular
potential energy surface (IPES) changes little during the S<sub>0</sub> ā S<sub>1</sub> transition. The minimum-energy structures
and inter- and intramolecular vibrational frequencies of PĀ·4ClE
and PĀ·(4ClE)<sub>2</sub> are calculated with the dispersion-corrected
density functional theory (DFT) methods B97-D3, ĻB97X-D, M06,
and M06-2X and the spin-consistent-scaled (SCS) variant of the approximate
second-order coupled-cluster method, SCS-CC2. All methods predict
the global minima to be Ļ-stacked centered coplanar structures
with the long axis of tetrachloroethene rotated by Ļ ā
60Ā° relative to the perylene long axis. The calculated binding
energies are in the range of ā<i>D</i><sub>0</sub> = 28ā35 kJ/mol. A second minimum is predicted with Ļ
ā 25Ā°, with ā¼1 kJ/mol smaller binding energy. Although
both monomers are achiral, both the PĀ·4ClE and PĀ·(4ClE)<sub>2</sub> complexes are chiral. The best agreement for adiabatic excitation
energies and vibrational frequencies is observed for the ĻB97X-D
and M06-2X DFT methods
WatsonāCrick and Sugar-Edge Base Pairing of Cytosine in the Gas Phase: UV and Infrared Spectra of CytosineĀ·2-Pyridone
While
keto-amino cytosine is the dominant species in aqueous solution,
spectroscopic studies in molecular beams and in noble gas matrices
show that other cytosine tautomers prevail in apolar environments.
Each of these offers two or three H-bonding sites (WatsonāCrick,
wobble, sugar-edge). The mass- and isomer-specific <i>S</i><sub>1</sub> ā <i>S</i><sub>0</sub> vibronic spectra
of cytosineĀ·2-pyridone (CytĀ·2PY) and 1-methylcytosineĀ·2PY
are measured using UV laser resonant two-photon ionization (R2PI),
UV/UV depletion, and IR depletion spectroscopy. The UV spectra of
the WatsonāCrick and sugar-edge isomers of CytĀ·2PY are
separated using UV/UV spectral hole-burning. Five different isomers
of CytĀ·2PY are observed in a supersonic beam. We show that the
WatsonāCrick and sugar-edge dimers of keto-amino cytosine with
2PY are the most abundant in the beam, although keto-amino-cytosine
is only the third most abundant tautomer in the gas phase. We identify
the different isomers by combining three different diagnostic tools:
(1) methylation of the cytosine N1āH group prevents formation
of both the sugar-edge and wobble isomers and gives the WatsonāCrick
isomer exclusively. (2) The calculated ground state binding and dissociation
energies, relative gas-phase abundances, excitation and the ionization
energies are in agreement with the assignment of the dominant CytĀ·2PY
isomers to the WatsonāCrick and sugar-edge complexes of keto-amino
cytosine. (3) The comparison of calculated ground state vibrational
frequencies to the experimental IR spectra in the carbonyl stretch
and NH/OH/CH stretch ranges strengthen this identification
NH<sub>3</sub> as a Strong HāBond Donor in Singly- and Doubly-Bridged Ammonia Solvent Clusters: 2āPyridoneĀ·(NH<sub>3</sub>)<sub><i>n</i></sub>, <i>n</i> = 1ā3
Mass-
and isomer-selected infrared spectra of 2-pyridoneĀ·(NH<sub>3</sub>)<sub><i>n</i></sub> clusters with <i>n</i> =
1ā3 were measured in the NH and CH stretch fundamental region
(2400ā3700 cm<sup>ā1</sup>) using infrared (IR) laser
depletion spectroscopy combined with resonant two-photon ionization
UV laser detection. The IR depletion spectra reveal three different
H-bonding topologies of these clusters: The <i>n</i> = 1
and 2 clusters form ammonia bridges stretching from the NāH
to the Cī»O group of the <i>cis</i>-amide function
of 2-pyridone (2PY), giving rise to intense and strongly red-shifted
(2PY)ĀNH and ammonia NH stretch bands. For <i>n</i> = 3,
two isomers (3X and 3Y) are observed in the IR spectra: The spectrum
of 3X is compatible with an ammonia-bridge structure like <i>n</i> = 2, with the third NH<sub>3</sub> accepting an H-bond
from C<sup>6</sup>āH of 2PY. The IR spectrum of 3Y exhibits
a broad IR band in the 2500ā3000 cm<sup>ā1</sup> range
and is characteristic of a bifurcated double-bridged structure in
which the first NH3 accepts an H-bond from the (2PY)ĀNH and donates
two H-bonds to the other two ammonias, both of which donate to the
Cī»O group of 2PY. This double-donor/double-bridge H-bonding
pattern increases the acceptor strength of the first ammonia and dramatically
lowers the (2PY)ĀNH stretching frequency to ā¼2700 cm<sup>ā1</sup>. For all clusters the ammonia 2Ī½<sub>4</sub> HNH bend overtones
in the 3180ā3320 cm<sup>ā1</sup> region gain intensity
by anharmonic coupling (Fermi resonance) to the hydrogen-bonded ammonia
NH stretches, which are red-shifted into the 3250ā3350 cm<sup>ā1</sup> region. The experimental results are supported by
optimized structures, vibrational frequencies, and IR intensities
calculated using density-functional theory with the B3LYP and PW91
functionals, as well as with the more recent functionals B97-D and
M06-2X, which are designed to include long-range dispersive interactions
Structure and Intermolecular Vibrations of PeryleneĀ·<i>trans</i>-1,2-Dichloroethene, a Weak Charge-Transfer Complex
The
vibronic spectra of strong charge-transfer complexes are often
congested or diffuse and therefore difficult to analyze. We present
the spectra of the Ļ-stacked complex perylene <i>trans</i>-1,2-dichloroethene, which is in the limit of weak charge transfer,
the electronic excitation remaining largely confined to the perylene
moiety. The complex is formed in a supersonic jet, and its S<sub>0</sub> ā S<sub>1</sub> spectra are investigated by two-color resonant
two-photon ionization (2C-R2PI) and fluorescence spectroscopies. Under
optimized conditions, vibrationally cold (<i>T</i><sub>vib</sub> ā 9 K) and well resolved spectra are obtained. These are
dominated by vibrational progressions in the āhindered-rotationā
R<sub>c</sub> intermolecular vibration with very low frequencies of
11 (S<sub>0</sub>) and 13 cm<sup>ā1</sup> (S<sub>1</sub>).
The intermolecular T<sub><i>z</i></sub> stretch and the
R<sub>a</sub> and R<sub>b</sub> bend vibrations are also observed.
The normally symmetry-forbidden intramolecular 1a<sub>u</sub> ātwistingā
vibration of perylene also appears, showing that the Ļ- stacking
interaction deforms the perylene moiety, lowering its local symmetry
from <i>D</i><sub>2<i>h</i></sub> to <i>D</i><sub>2</sub>. We calculate the structure and vibrations of this complex
using six different density functional theory (DFT) methods (CAM-B3LYP,
BH&HLYP, B97-D3, ĻB97X-D, M06, and M06-2X) and compare the
results to those calculated by correlated wave function methods (SCS-MP2
and SCS-CC2). The structures and vibrational frequencies predicted
with the CAM-B3LYP and BH&HLYP methods disagree with the other
calculations and with experiment. The other four DFT and the ab initio
methods all predict a Ļ-stacked ācenteredā structure
with nearly coplanar perylene and dichloroethene moieties and intermolecular
binding energies of <i>D</i><sub>e</sub> = ā20.8
to ā26.1 kJ/mol. The 0<sub>0</sub><sup>0</sup> band of the S<sub>0</sub> ā S<sub>1</sub> transition is red-shifted by Ī“Ī½ = ā301 cm<sup>ā1</sup> relative to that of perylene, implying that the <i>D</i><sub>e</sub> increases by 3.6 kJ/mol or ā¼15% upon
electronic excitation. The intermolecular vibrational frequencies
are assigned to the calculated R<sub>c</sub>, T<sub>z</sub>, R<sub>a</sub>, and R<sub>b</sub> vibrations by comparing to the observed/calculated
frequencies and S<sub>0</sub> ā S<sub>1</sub> FranckāCondon
factors. Of the three TD-DFT methods tested, the hybrid-meta-GGA functional
M06-2X shows the best agreement with the experimental electronic transition
energies, spectral shifts, and vibronic spectra, closely followed
by the ĻB97X-D functional, while the M06 functional gives inferior
results
Excited-State Structure, Vibrations, and Nonradiative Relaxation of Jet-Cooled 5āFluorocytosine
The <i>S</i><sub>0</sub> ā <i>S</i><sub>1</sub> vibronic
spectrum and <i>S</i><sub>1</sub> state
nonradiative relaxation of jet-cooled keto-amino 5-fluorocytosine
(5FCyt) are investigated by two-color resonant two-photon ionization
spectroscopy at 0.3 and 0.05 cm<sup>ā1</sup> resolution. The
0<sub>0</sub><sup>0</sup> rotational
band contour is polarized in-plane, implying that the electronic transition
is <sup>1</sup><i>ĻĻ</i>*. The electronic transition
dipole moment orientation and the changes of rotational constants
agree closely with the SCS-CC2 calculated values for the <sup>1</sup><i>ĻĻ</i>* (<i>S</i><sub>1</sub>)
transition of 5FCyt. The spectral region from 0 to 300 cm<sup>ā1</sup> is dominated by overtone and combination bands of the out-of-plane
Ī½<sub>1</sub><sup>ā²</sup> (boat), Ī½<sub>2</sub><sup>ā²</sup> (butterfly), and Ī½<sub>3</sub><sup>ā²</sup> (HNāC<sub>6</sub>H twist)
vibrations, implying that the pyrimidinone frame is distorted out-of-plane
by the <sup>1</sup><i>ĻĻ</i>* excitation, in
agreement with SCS-CC2 calculations. The number of vibronic bands
rises strongly around +350 cm<sup>ā1</sup>; this is attributed
to the <sup>1</sup><i>ĻĻ</i>* state barrier
to planarity that corresponds to the central maximum of the double-minimum
out-of-plane vibrational potentials along the Ī½<sub>1</sub><sup>ā²</sup>, Ī½<sub>2</sub><sup>ā²</sup>, and Ī½<sub>3</sub><sup>ā²</sup> coordinates,
which gives rise to a high density of vibronic excitations. At +1200
cm<sup>ā1</sup>, rapid nonradiative relaxation (<i>k</i><sub>nr</sub> ā„ 10<sup>12</sup> s<sup>ā1</sup>) sets
in, which we interpret as the height of the <sup>1</sup><i>ĻĻ</i>* state barrier in front of the lowest <i>S</i><sub>1</sub>/<i>S</i><sub>0</sub> conical intersection. This barrier
in 5FCyt is 3 times higher than that in cytosine. The lifetimes of
the Ī½ā² = 0, 2Ī½<sub>1</sub><sup>ā²</sup>, 2Ī½<sub>2</sub><sup>ā²</sup>, 2Ī½<sub>1</sub><sup>ā²</sup> + 2Ī½<sub>2</sub><sup>ā²</sup>, 4Ī½<sub>2</sub><sup>ā²</sup>, and 2Ī½<sub>1</sub><sup>ā²</sup> + 4Ī½<sub>2</sub><sup>ā²</sup> levels
are determined from Lorentzian widths fitted to the rotational band
contours and are Ļ ā„ 75 ps for Ī½ā² = 0, decreasing
to Ļ ā„ 55 ps at the 2Ī½<sub>1</sub><sup>ā²</sup> + 4Ī½<sub>2</sub><sup>ā²</sup> level at +234 cm<sup>ā1</sup>. These gas-phase lifetimes are twice those of <i>S</i><sub>1</sub> state cytosine and 10ā100 times those of the
other canonical nucleobases in the gas phase. On the other hand, the
5FCyt gas-phase lifetime is close to the 73 ps lifetime in room-temperature
solvents. This lack of dependence on temperature and on the surrounding
medium implies that the 5FCyt nonradiative relaxation from its <i>S</i><sub>1</sub> (<sup>1</sup><i>ĻĻ</i>*) state is essentially controlled by the same ā¼1200 cm<sup>ā1</sup> barrier and conical intersection both in the gas
phase and in solution
Excitonic Splitting and Vibronic Coupling Analysis of the <i>m</i>āCyanophenol Dimer
The <i>S</i><sub>1</sub>/<i>S</i><sub>2</sub> splitting of the <i>m</i>-cyanophenol dimer, (mCP)<sub>2</sub> and the delocalization
of its excitonically coupled <i>S</i><sub>1</sub>/<i>S</i><sub>2</sub> states are
investigated by mass-selective two-color resonant two-photon ionization
and dispersed fluorescence spectroscopy, complemented by a theoretical
vibronic coupling analysis based on correlated <i>ab initio</i> calculations at the approximate coupled cluster CC2 and SCS-CC2
levels. The calculations predict three close-lying ground-state minima
of (mCP)<sub>2</sub>: The lowest is slightly <i>Z</i>-shaped
(<i>C</i><sub><i>i</i></sub>-symmetric); the second-lowest
is <5 cm<sup>ā1</sup> higher and planar (<i>C</i><sub>2<i>h</i></sub>). The vibrational ground state is
probably delocalized over both minima. The S<sub>0</sub> ā
S<sub>1</sub> transition of (mCP)<sub>2</sub> is electric-dipole allowed
(A<sub><i>g</i></sub> ā A<sub><i>u</i></sub>), while the S<sub>0</sub> ā S<sub>2</sub> transition is forbidden
(A<sub><i>g</i></sub> ā A<sub><i>g</i></sub>). Breaking the inversion symmetry by <sup>12</sup>C/<sup>13</sup>C- or H/D-substitution renders the S<sub>0</sub> ā S<sub>2</sub> transition partially allowed; the excitonic contribution to the
S<sub>1</sub>/S<sub>2</sub> splitting is Ī<sub><i>exc</i></sub> = 7.3 cm<sup>ā1</sup>. Additional isotope-dependent
contributions arise from the changes of the <i>m</i>-cyanophenol
zero-point vibrational energy upon electronic excitation, which are
Ī<sub><i>iso</i></sub>(<sup>12</sup>C/<sup>13</sup>C) = 3.3 cm<sup>ā1</sup> and Ī<sub><i>iso</i></sub>(H/D) = 6.8 cm<sup>ā1</sup>. Only partial localization
of the exciton occurs in the <sup>12</sup>C/<sup>13</sup>C and H/D
substituted heterodimers. The SCS-CC2 calculated excitonic splitting
is Ī<sub><i>el</i></sub> = 179 cm<sup>ā1</sup>; when multiplying this with the vibronic quenching factor Ī<sub><i>vibron</i></sub><sup><i>exp</i></sup> = 0.043, we obtain an exciton splitting
Ī<sub><i>vibron</i></sub><sup><i>exp</i></sup> = 7.7 cm<sup>ā1</sup>, which agrees very well with the experimental Ī<sub><i>exc</i></sub> = 7.3 cm<sup>ā1</sup>. The semiclassical
exciton hopping times range from 3.2 ps in (mCP)<sub>2</sub> to 5.7
ps in the heterodimer (mCP-<i>h</i>)Ā·(mCP-<i>d</i>). A multimode vibronic coupling analysis is performed encompassing
all the vibronic levels of the coupled <i>S</i><sub>1</sub>/<i>S</i><sub>2</sub> states from the <i>v</i> = 0 level to 600 cm<sup>ā1</sup> above. Both linear and quadratic
vibronic coupling schemes were investigated to simulate the S<sub>0</sub> ā S<sub>1</sub>/S<sub>2</sub> vibronic spectra; those
calculated with the latter scheme agree better with experiment
Excited-State Structure and Dynamics of KetoāAmino Cytosine: The <sup>1</sup>ĻĻ* State Is Nonplanar and Its Radiationless Decay Is Not Ultrafast
We
have measured the mass- and tautomer-specific S<sub>0</sub> ā
S<sub>1</sub> vibronic spectra and S<sub>1</sub> state lifetimes of
the ketoāamino tautomer of cytosine cooled in supersonic jets,
using two-color resonant two-photon ionization (R2PI) spectroscopy
at 0.05 cm<sup>ā1</sup> resolution. The rotational contours
of the 0<sub>0</sub><sup>0</sup> band
and nine vibronic bands up to +437 cm<sup>ā1</sup> are polarized
in the pyrimidinone plane, proving that the electronic excitation
is to a <sup>1</sup>ĻĻ* state. All vibronic excitations
up to +437 cm<sup>ā1</sup> are overtone and combination bands
of the low-frequency out-of-plane Ī½<sub>1</sub><sup>ā²</sup> (butterfly), Ī½<sub>2</sub><sup>ā²</sup> (boat),
and Ī½<sub>3</sub><sup>ā²</sup> (HāNāC<sup>6</sup>āH twist) vibrations. UV
vibronic spectrum simulations based on approximate second-order coupled-cluster
(CC2) calculations of the ground and <sup>1</sup>ĻĻ* states
are in good agreement with the experimental R2PI spectrum, but only
if the calculated Ī½<sub>1</sub><sup>ā²</sup> and Ī½<sub>2</sub><sup>ā²</sup> frequencies are reduced by a
factor of 4 and anharmonicity is included. Together with the high
intensity of the Ī½<sub>1</sub><sup>ā²</sup> and Ī½<sub>2</sub><sup>ā²</sup> overtone vibronic excitations, this
implies that the <sup>1</sup>ĻĻ* potential energy surface
is much softer and much more anharmonic in the out-of-plane directions
than predicted by the CC2 method. The <sup>1</sup>ĻĻ*
state lifetime is determined from the Lorentzian line broadening necessary
to reproduce the rotational band contours: at the 0<sub>0</sub><sup>0</sup> band it is Ļ = 44 ps, remains
at Ļ = 35ā45 ps up to +205 cm<sup>ā1</sup>, and
decreases to 25ā30 ps up to +437 cm<sup>ā1</sup>. These
lifetimes are 20ā40 times longer than the 0.5ā1.5 ps
lifetimes previously measured with femtosecond pumpāprobe techniques
at higher vibrational energies (1500ā3800 cm<sup>ā1</sup>). Thus, the nonradiative relaxation rate of ketoāamino cytosine
close to the <sup>1</sup>ĻĻ* state minimum is <i>k</i><sub>nr</sub> ā¼ 2.5 Ć 10<sup>10</sup> s<sup>ā1</sup>, much smaller than at higher energies. An additional
nonradiative decay channel opens at +500 cm<sup>ā1</sup> excess
energy. Since high overtone bands of Ī½<sub>1</sub><sup>ā²</sup> and Ī½<sub>2</sub><sup>ā²</sup> are observed in the R2PI
spectrum but only a single weak 2Ī½<sub>3</sub><sup>ā²</sup> band, we propose that Ī½<sub>3</sub><sup>ā²</sup> is a promoting
mode for nonradiative decay, consistent with the observation that
the Ī½<sub>3</sub><sup>ā²</sup> normal-mode eigenvector points toward the āC<sup>6</sup>-puckeredā
conical intersection geometry
Gas-Phase Cytosine and CytosineāN<sub>1</sub>āDerivatives Have 0.1ā1 ns Lifetimes Near the S<sub>1</sub> State Minimum
Ultraviolet
radiative damage to DNA is inefficient because of the
ultrafast S<sub>1</sub> ā S<sub>0</sub> internal conversion
of its nucleobases. Using picosecond pumpāionization delay
measurements, we find that the S<sub>1</sub>(<sup>1</sup><i>ĻĻ</i>*) state vibrationless lifetime of gas-phase keto-amino cytosine
(Cyt) is Ļ = 730 ps or ā¼700 times longer than that measured
by femtosecond pumpāprobe ionization at higher vibrational
excess energy, <i>E</i><sub>exc</sub>. N<sub>1</sub>-Alkylation
increases the S<sub>1</sub> lifetime up to Ļ = 1030 ps for N<sub>1</sub>-ethyl-Cyt but decreases it to 100 ps for N<sub>1</sub>-isopropyl-Cyt.
Increasing the vibrational energy to <i>E</i><sub>exc</sub> = 300ā550 cm<sup>ā1</sup> decreases the lifetimes
to 20ā30 ps. The nonradiative dynamics of S<sub>1</sub> cytosine
is not solely a property of the amino-pyrimidinone chromophore but
is strongly influenced by the N<sub>1</sub>-substituent. Correlated
excited-state calculations predict that the gap between the S<sub>2</sub>(<sup>1</sup><i>n</i><sub>O</sub>Ļ*) and S<sub>1</sub>(<sup>1</sup><i>ĻĻ</i>*) states decreases
along the series of N<sub>1</sub>-derivatives, thereby influencing
the S<sub>1</sub> state lifetime