STS sequence alignments for O.rufipogon

There are 42 STS sequence alignments in FASTA format in the zip file. Each alignment include an outgroup sequence and 96 ingroup sequences (missing ones are not included). Name of each sequence start with a flow number and followed by sts number, organism/group annotation by IRRI, country of origin, IRGC number and chromosome number. Additional sample and loci information can be found in Table S1 and S2 of the supplementary information on Molecular Ecology website

Multivariate regression analysis for mtDNA, HPV infection and cervical cancer.

<p>Legend: A Forest Plot showing the odds ratio values and 95% confidence intervals for: (A) Model IV—Pap cytology, mtDNA ancestry and HPV infection, adjusted by socio-demographic variables and (B) Model V—Pap cytology, mtDNA haplogroups and HPV infection, adjusted by socio-demographic variables. The x-axis represents the odds ratio (circles, square, others) and 95% confidence intervals (whiskers). The dashed vertical line indicates the OR value of 1. Non-significant values are shown as a small filled circle. Significant values are shown as squares (HPV33), diamonds (other HPV-HR), asterisks (HPV58), triangles (HPV16), inverted triangles (HPV6/11), and unfilled circles (multiple infections), with the OR (CI = 95%) as a legend into the figure. Details about other OR (CI = 95%) and p values are provided in the Supplementary Information (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0190966#pone.0190966.s004" target="_blank">S4</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0190966#pone.0190966.s005" target="_blank">S5</a> Tables). Amerindian ancestry and haplogroup A were not plotted since they were used as a reference values.</p

mtDNA ancestry, cervical lesions and socio-demographic variables for the Posadas population.

<p>mtDNA ancestry, cervical lesions and socio-demographic variables for the Posadas population.</p

Association analysis between HPV infection and development of cervical lesions.

<p>Association analysis between HPV infection and development of cervical lesions.</p

Frequency of mtDNA haplogroups and phylogroups in the study groups.

<p>Frequency of mtDNA haplogroups and phylogroups in the study groups.</p

Frequency of HPV types in the study groups.

<p>Frequency of HPV types in the study groups.</p

Multivariate regression analysis for mtDNA and cervical cancer.

<p>Legend: A Forest Plot showing odds ratio values and 95% confidence intervals for: (A) Model II—Pap cytology and mtDNA ancestry, adjusted by socio-demographic variables and, (B) Model III—Pap cytology and mtDNA haplogroups, adjusted by socio-demographic variables. The x-axis represents the odds ratio (circles and square) and 95% confidence intervals (whiskers). The dashed vertical line indicates an OR value of 1. Non-significant values are shown as a small circle. Significant values are shown as square, with the OR (CI95%) as a legend into the figure. Details on other OR (CI = 95%) and p values are provided in the Supplementary Information (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0190966#pone.0190966.s002" target="_blank">S2</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0190966#pone.0190966.s003" target="_blank">S3</a> Tables). Amerindian ancestry and haplogroup A were not plotted since they were used as reference values (OR = 1).</p