Altered Retinoic Acid Metabolism in Diabetic Mouse Kidney Identified by 18O Isotopic Labeling and 2D Mass Spectrometry

Numerous metabolic pathways have been implicated in diabetes-induced renal injury, yet few studies have utilized unbiased systems biology approaches for mapping the interconnectivity of diabetes-dysregulated proteins that are involved. We utilized a global, quantitative, differential proteomic approach to identify a novel retinoic acid hub in renal cortical protein networks dysregulated by type 2 diabetes.Total proteins were extracted from renal cortex of control and db/db mice at 20 weeks of age (after 12 weeks of hyperglycemia in the diabetic mice). Following trypsinization, (18)O- and (16)O-labeled control and diabetic peptides, respectively, were pooled and separated by two dimensional liquid chromatography (strong cation exchange creating 60 fractions further separated by nano-HPLC), followed by peptide identification and quantification using mass spectrometry. Proteomic analysis identified 53 proteins with fold change >or=1.5 and p<or=0.05 after Benjamini-Hochberg adjustment (out of 1,806 proteins identified), including alcohol dehydrogenase (ADH) and retinaldehyde dehydrogenase (RALDH1/ALDH1A1). Ingenuity Pathway Analysis identified altered retinoic acid as a key signaling hub that was altered in the diabetic renal cortical proteome. Western blotting and real-time PCR confirmed diabetes-induced upregulation of RALDH1, which was localized by immunofluorescence predominantly to the proximal tubule in the diabetic renal cortex, while PCR confirmed the downregulation of ADH identified with mass spectrometry. Despite increased renal cortical tissue levels of retinol and RALDH1 in db/db versus control mice, all-trans-retinoic acid was significantly decreased in association with a significant decrease in PPARbeta/delta mRNA.Our results indicate that retinoic acid metabolism is significantly dysregulated in diabetic kidneys, and suggest that a shift in all-trans-retinoic acid metabolism is a novel feature in type 2 diabetic renal disease. Our observations provide novel insights into potential links between altered lipid metabolism and other gene networks controlled by retinoic acid in the diabetic kidney, and demonstrate the utility of using systems biology to gain new insights into diabetic nephropathy

Intra-annual relationship between precipitation and forest disturbance in the African rainforest

Analysis of forest disturbance patterns in relation to precipitation seasonality is important for understanding African tropical forest dynamics under changing climate conditions and different levels of human activities. Newly available radar-based forest disturbance information now enables an investigation of the intra-annual relationship between precipitation and forest disturbance in a spatially and temporally explicit manner, especially in the tropics, where frequent cloud cover hinders the use of optical-based remote sensing products. In this study, we applied cross-correlation on monthly precipitation and forest disturbance time series for 2019 and 2020 at a 0.5◦ grid in the African rainforest. We used the magnitude of the correlation and time lag to assess the intra-annual relationship between precipitation and forest disturbance, and introduced accessibility proxies to analyse the spatial variation of the relationship. Results revealed that a significant negative correlation between forest disturbance and precipitation dominates the study region. We found that significant negative correlations appear on average closer to settlements with overall smaller variations in travel time to settlements compared to grid cells with non-significant and significant positive correlation. The magnitude of the negative correlation increases as the travel time to settlements increases, implying that forest disturbances in less accessible areas are more affected by precipitation seasonality and that in particular human-induced disturbance activities are predominantly carried out in the drier months. Few areas showed a significant positive correlation, mainly resulting from natural causes such as flooding. These new insights in the interaction between forest disturbance, precipitation and accessibility provide a step forward inunderstanding the complex interactions that underlie the complexity of forest loss patterns that we can increasingly capture with Earth Observation approaches. As such, they can support forest conservation and management in coping with climate change induced changes of precipitation patterns in African rainforest countries

Engineered Nanomaterials for Emerging Contaminant Removal from Wastewater

Emerging contaminants (ECs), mainly organic compounds, are pollutants of growing concern. Several important ones are pharmaceuticals and personal care products, wood preservatives, hormones, plasticizers, pesticides, laundry detergents, surfactants, disinfectants, food additives, and flame retardants among other organic compounds recently found in natural wastewater stream that are generated by both human and also industrial activities. Most of ECs lacks of standard regulations; nevertheless, they could drive to lethal effects on aquatic life but also in human even at small concentrations. The conventional water treatment plants are not able to efficiently remove or even degrade these pollutants, so another effective and expensive tertiary treatment method is required. It is known that adsorption is a very useful method to remove different kinds of contaminants being then a promising method for the removal of EC due to its simplicity on operating design, low initial cost for implementation, and high efficiency. The current review resumes the technological approaches regarding adsorption process used for the treatment of ECs.Fil: Ollier Primiano, Romina Paola. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; ArgentinaFil: Villanueva, María Emilia. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Química y Metabolismo del Fármaco. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Química y Metabolismo del Fármaco; Argentina. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Departamento de Química Analítica y Fisicoquímica. Cátedra de Química Analítica Instrumental; Argentina. Universidad Nacional de Luján. Departamento de Ciencias Básicas; ArgentinaFil: Copello, Guillermo Javier. Universidad de Buenos Aires. Facultad de Farmacia y Bioquimica. Instituto de Química y Metabolismo del Fármaco; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Química y Metabolismo del Fármaco. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Instituto de Química y Metabolismo del Fármaco; ArgentinaFil: Alvarez, Vera Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; ArgentinaFil: Sanchez, Laura Mabel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones en Ciencia y Tecnología de Materiales. Universidad Nacional de Mar del Plata. Facultad de Ingeniería. Instituto de Investigaciones en Ciencia y Tecnología de Materiales; Argentin

Truncation of N- and C-terminal regions of Streptococcus mutans dextranase enhances catalytic activity

Multiple forms of native and recombinant endo-dextranases (Dexs) of the glycoside hydrolase family (GH) 66 exist. The GH 66 Dex gene from Streptococcus mutans ATCC 25175 (SmDex) was expressed in Escherichia coli. The recombinant full-size (95.4 kDa) SmDex protein was digested to form an 89.8 kDa isoform (SmDex90). The purified SmDex90 was proteolytically degraded to more than seven polypeptides (23-70 kDa) during long storage. The protease-insensitive protein was desirable for the biochemical analysis and utilization of SmDex. GH 66 Dex was predicted to comprise four regions from the N- to C-termini: N-terminal variable region (N-VR), conserved region (CR), glucan-binding site (GBS), and C-terminal variable region (C-VR). Five truncated SmDexs were generated by deleting N-VR, GBS, and/or C-VR. Two truncation-mutant enzymes devoid of C-VR (TM-NCGΔ) or N-VR/C-VR (TM-ΔCGΔ) were catalytically active, thereby indicating that N-VR and C-VR were not essential for the catalytic activity. TM-ΔCGΔ did not accept any further protease-degradation during long storage. TM-NCGΔ and TM-ΔCGΔ enhanced substrate hydrolysis, suggesting that N-VR and C-VR induce hindered substrate binding to the active site

A study on the significance of lithology in groundwater quality of Madurai district, Tamil Nadu (India)

The groundwater occurs in hard rock aquifers, which is more predominant in India. It is more common in the southern peninsula especially Tamil Nadu. Madurai district is located in the central part of Tamil Nadu, underlain predominantly by crystalline formations and alluvium along the river course. The study area being a hard rock terrain, the groundwater is stored in cracks, fissures, joints, etc., and hence the quantity is lesser. The frequent failure of monsoon also aggravates the scarcity of this commodity. In this scenario, the quality and hydrogeochemistry of the available quantum of water plays a significant role for the determination of its utility and in tracing out the hydrogeochemical evaluation. Fifty-four groundwater samples were collected representing the entire study area. The samples collected were representative covering all the major litho units of the study area (charnockite -21, fissile hornblende biotite gneiss-21, granite-4, quartzite-3, and 5 samples from flood plain alluvium). The samples collected were analyzed for major ions and were classified for different purposes like drinking, domestic, and agriculture, with respect to lithology.The comparison of the groundwater samples with the drinking water standards shows that few samples fall above the drinking water limit irrespective of lithology. The samples were classified with sodium absorption ratio, electrical conductivity, residual sodium carbonate, sodium percentage (Na %), Kellys ratio, and magnesium hazard, and permeability index for irrigation purpose found that most of the samples were suitable for irrigation purpose irrespective of lithology. Total hardness and corrosivity index were studied for the domestic purpose and found that the samples of the granitic terrain are safe. Apart from this, index of base exchange, Schoellers water type, Stuyfzands classification were attempted along with Gibbs plot to determine the major geochemical activity of the region. The study reveals that the samples collected from granitic and quartzitic terrains are comparatively better for the domestic and drinking purpose due to the presence of resistant minerals to weathering