X-ray resonant exchange scattering investigations of rare earth intermetallic compounds: TbNi2B2C, TbCu2Ge2, and GdAgSb2

A coherent review on the x-ray resonant exchange scattering and basic recapitulation of phenomenological aspects of magnetic interactions were attempted in this thesis. Further, application of the XRES technique to understand the physical origin of various magnetic structures of TbNi2B2 C, TbCu2Ge2 and GdAgSb2 single crystals were tried as a main effort.;TbNi2B2C orders in a longitudinal spin wave structure below TN = 14.5 K. Concomitant with the magnetic ordering, structural phase transition from tetragonal phase (T \u3e TN) to orthorhombic phase occurred. The modulation direction was resolved to be along the longer axis in the basal plane. The wave vector also showed strong temperature dependence and smooth lock-in transition to tau = 611 with the onset of the ferromagnetism at TWFM ~ 8 K. Tb ion\u27s ferromagnetic component was directly observed by x-ray magnetic circular dichroism experiments. A microscopic model was also constructed to account for the ferromagnetism.;Resonant and nonresonant scatterings on TbCu2Ge2 revealed a spin reorientation. By combining the two techniques together, the direction of the magnetic moment in the basal plane was extracted which displayed moment reorientation from [010] (Tt \u3c T \u3c TN) to the ground state configuration of the [110] direction.;Ab initio magnetic structure determination was made on the GdAgSb2. Taking advantage of the polarization analysis and vector properties of the scattering cross sections, the magnetic moment direction as well as modulation wave vector was determined

Atomic level three-dimensional structure of individual particles with XFELs

11Ysciescopu

Single-scatter channel impulse response model of non-line-of-sight ultraviolet communications

Previous studies on the temporal characteristics of single-scatter transmission in non-line-of-sight (NLOS) ultraviolet communications (UVC) were based on the prolate-spheroidal coordinate system. In this work, a novel single-scatter channel impulse response (CIR) model is proposed in the spherical coordinate system, which is more natural and comprehensible than the prolate-spheroidal coordinate system in practical applications. Additionally, the results of the widely accepted Monte-Carlo (MC)-based channel model of NLOS UVC are provided to verify the proposed single-scatter CIR model. Results indicate that the computational time costed by the proposed single-scatter CIR model is decreased to less than 0.7% of the MC-based one with comparable accuracy in assessing the temporal characteristics of NLOS UVC channels.Comment: 10 pages, 4 figure

Quantitative Imaging of Single, Unstained Viruses with Coherent X-rays

Since Perutz, Kendrew and colleagues unveiled the structure of hemoglobin and myoglobin based on X-ray diffraction analysis in the 1950s, X-ray crystallography has become the primary methodology used to determine the 3D structure of macromolecules. However, biological specimens such as cells, organelles, viruses and many important macromolecules are difficult or impossible to crystallize, and hence their structures are not accessible by crystallography. Here we report, for the first time, the recording and reconstruction of X-ray diffraction patterns from single, unstained viruses. The structure of the viral capsid inside a virion was visualized. This work opens the door for quantitative X-ray imaging of a broad range of specimens from protein machineries, viruses and organelles to whole cells. Moreover, our experiment is directly transferable to the use of X-ray free electron lasers, and represents a major experimental milestone towards the X-ray imaging of single macromolecules.Comment: 16 pages, 5 figure

Discovery and Survey of a New Mandarivirus Associated with Leaf Yellow Mottle Disease of Citrus in Pakistan.

During biological indexing for viruses in citrus trees, in a collection of Symons sweet orange (SSO) (Citrus sinensis L. Osbeck) graft inoculated with bark tissues of citrus trees from the Punjab Province in Pakistan, several SSO trees exhibited leaf symptoms of vein yellowing and mottle. High-throughput sequencing by Illumina of RNA preparation depleted of ribosomal RNAs from one symptomatic tree, followed by BLAST analyses, allowed identification of a novel virus, tentatively named citrus yellow mottle-associated virus (CiYMaV). Genome features of CiYMaV are typical of members of the genus Mandarivirus (family Alphaflexiviridae). Virus particles with elongated flexuous shape and size resembling those of mandariviruses were observed by transmission electron microscopy. The proteins encoded by CiYMaV share high sequence identity, conserved motifs, and phylogenetic relationships with the corresponding proteins encoded by Indian citrus ringspot virus (ICRSV) and citrus yellow vein clearing virus (CYVCV), the two current members of the genus Mandarivirus. Although CYVCV is the virus most closely related to CiYMaV, the two viruses can be serologically and biologically discriminated from each other. A reverse-transcription PCR method designed to specifically detect CiYMaV revealed high prevalence (62%) of this virus in 120 citrus trees from the Punjab Province, Pakistan, where the novel virus was found mainly in mixed infection with CYVCV and citrus tristeza virus. However, a preliminary survey on samples from 200 citrus trees from the Yunnan Province, China failed to detect CiYMaV in this region, suggesting that the molecular, serological, and biological data provided here are timely and can help to prevent the spread of this virus in citrus-producing countries

Implication of Non-electrostatic Contribution to Deionization in Flow-Electrode CDI: Case Study of Nitrate Removal From Contaminated Source Waters

While flow-electrode capacitive deionization (FCDI) operated in short-circuited closed cycle (SCC) mode appears to hold promise for removal of salt from brackish source waters, there has been limited investigation on the removal of other water constituents such as nitrate, fluoride or bromide in combination with salt removal. Of particular concern is the effectiveness of FCDI when ions, such as nitrate, are recognized to non-electrostatically adsorb strongly to activated carbon particles thereby potentially rendering it difficult to regenerate these particles. In this study, SCC FCDI was used to desalt source waters containing nitrate at different concentrations. Results indicate that nitrate can be removed from source waters using FCDI to concentrations <1 mg NO3-N L−1 though a lower quality target such as 10 mg L−1 would be more cost-effective, particularly where the influent nitrate concentration is high (50 mg NO3-N L−1). Although studies of the fate of nitrate in the FCDI system show that physico-chemical adsorption of nitrate to the carbon initially plays a vital role in nitrate removal, the ongoing process of nitrate removal is not significantly affected by this phenomenon with this lack of effect most likely due to the continued formation of electrical double layers enabling capacitive nitrate removal. In contrast to conventional CDI systems, constant voltage mode is shown to be more favorable in maintaining stable effluent quality in SCC FCDI because the decrease in electrical potential that occurs in constant current operation leads to a reduction in the extent of salt removal from the brackish source waters. Through periodic replacement of the electrolyte at a water recovery of 91.4%, we show that the FCDI system can achieve a continuous desalting performance with the effluent NO3-N concentration below 1 mg NO3-N L−1 at low energy consumption (~0.5 kWh m−3) but high productivity

A Sec-dependent effector, CLIBASIA_04425, contributes to virulence in ‘Candidatus Liberibater asiaticus’

Citrus Huanglongbing (HLB) is the most destructive citrus disease worldwide, mainly caused by ‘Candidatus Liberibacter asiaticus’ (CLas). It encodes a large number of Sec-dependent effectors that contribute to HLB progression. In this study, an elicitor triggering ROS burst and cell death in Nicotiana benthamiana, CLIBASIA_04425 (CLas4425), was identified. Of particular interest, its cell death-inducing activity is associated with its subcellular localization and the cytoplasmic receptor Botrytis-induced kinase 1 (BIK1). Compared with CLas infected psyllids, CLas4425 showed higher expression level in planta. The transient expression of CLas4425 in N. benthamiana and its overexpression in Citrus sinensis enhanced plant susceptibility to Pseudomonas syringae pv. tomato DC3000 ΔhopQ1-1 and CLas, respectively. Furthermore, the salicylic acid (SA) level along with the expression of genes NPR1/EDS1/NDR1/PRs in SA signal transduction was repressed in CLas4425 transgenic citrus plants. Taken together, CLas4425 is a virulence factor that promotes CLas proliferation, likely by interfering with SA-mediated plant immunity. The results obtained facilitate our understanding of CLas pathogenesis

Coherent diffraction microscopy at SPring-8: instrumentation, data acquisition and data analysis

An instrumentation and data analysis review of coherent diffraction microscopy at SPring-8 is given. This work will be of interest to those who want to apply coherent diffraction imaging to studies of materials science and biological samples

Towards single particle imaging of human chromosomes at SACLA

Robinson I., Schwenke J., Yusuf M., et al. Towards single particle imaging of human chromosomes at SACLA. Journal of Physics B: Atomic, Molecular and Optical Physics, 48, 24, 244007. https://doi.org/10.1088/0953-4075/48/24/244007