Feasibility of an Electro-Optic Link for Bondpad-less CMOS Lab-on-Chips

This paper explores the feasibility of developing CMOS-based lab-on-chips to analyse the properties of a fluid, without the need for bond wires. Both inductive and electro-optical schemes are suggested as possible solutions. Specifically, this paper details a novel approach in achieving electro-optical modulation in unmodified, commercially-available CMOS technology. By exploiting the plasma dispersion effect, it is shown how mid-infrared light can be modulated using parasitic structures designed in a CMOS integrated circuit. Both the fundamental theory and practical realisation are supported with measured data from an experimental setup.Accepted versio

Introduction to the Symposium “Molluscan Models: Advancing Our Understanding of the Eye”

Since the time of Darwin, the eye has been a subject of evolutionary and comparative biologists alike who were intrigued by the structural complexity and morphological diversity of eyes in nature. Much of what we know about the eye—development, structure, physiology, and function—has been determined from only a handful of model organisms, specifically the mouse and the fly. One major phylum in particular, the Mollusca, has been underutilized in investigating the evolution and development of the eye. This is surprising as molluscs display a myriad of eye types, such as simple pit eyes without any apparatus to focus images, compound eyes that superficially resemble the eyes of flies, camera-type eyes that are similar to vertebrate eyes, and eyes with mirrors, just to name a few. As a result, molluscan eyes comprise more morphological diversity than seen even in the largest animal phylum, the Arthropoda

Toward Developing Models to Study the Disease, Ecology, and Evolution of the Eye in Mollusca

Several invertebrate systems have been developed to study various aspects of the eye and eye disease including Drosophila, Planaria, Platynereis, and most recently, the cubozoan jellyfish Tripedalia; however, molluscs, the second largest metazoan phylum, so far have been underrepresented in eye research. This is surprising as mollusc systems offer opportunities to study visual processes that may be altered by disease, vision physiology, development of the visual system, behavior, and evolution. Malacologists have labored for over a century as morphologists, systematists, physiologists, and ecologists in order to understand the structural and functional diversity in molluscs at all levels of biological organization. Yet, malacologists have had little opportunity to interact with researchers whose interests are restricted to the biology and development of eyes as model systems as they tend not to publish in the same journals or attend the same meetings. In an effort to highlight the advantages of molluscan eyes as a model system and encourage greater collaboration among researchers, I provide an overview of molluscan eye research from these two perspectives: eye researchers whose interests involve the development, physiology, and disease of the eye and malacologists who study the complete organism in its natural environment. I discuss the developmental and genetic information available for molluscan eyes and the need to place this work in an evolutionary perspective. Finally, I discuss how synergy between these two groups will advance eye research, broaden research in both fields, and aid in developing new molluscan models for eye research

Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae)

Background Opsins are the only class of proteins used for light perception in image-forming eyes. Gene duplication and subsequent functional divergence of opsins have played an important role in expanding photoreceptive capabilities of organisms by altering what wavelengths of light are absorbed by photoreceptors (spectral tuning). However, new opsin copies may also acquire novel function or subdivide ancestral functions through changes to temporal, spatial or the level of gene expression. Here, we test how opsin gene copies diversify in function and evolutionary fate by characterizing four rhabdomeric (Gq-protein coupled) opsins in the scallop, Argopecten irradians, identified from tissue-specific transcriptomes. Results Under a phylogenetic analysis, we recovered a pattern consistent with two rounds of duplication that generated the genetic diversity of scallop Gq-opsins. We found strong support for differential expression of paralogous Gq-opsins across ocular and extra-ocular photosensitive tissues, suggesting that scallop Gq-opsins are used in different biological contexts due to molecular alternations outside and within the protein-coding regions. Finally, we used available protein models to predict which amino acid residues interact with the light-absorbing chromophore. Variation in these residues suggests that the four Gq-opsin paralogs absorb different wavelengths of light. Conclusions Our results uncover novel genetic and functional diversity in the light-sensing structures of the scallop, demonstrating the complicated nature of Gq-opsin diversification after gene duplication. Our results highlight a change in the nearly ubiquitous shadow response in molluscs to a narrowed functional specificity for visual processes in the eyed scallop. Our findings provide a starting point to study how gene duplication may coincide with eye evolution, and more specifically, different ways neofunctionalization of Gq-opsins may occur