Survival and recruitment of the multimammate mouse, Mastomys natalensis (Smith 1834), in a rice agro-ecosystem

We investigated the recruitment and survival of the multimammate mouse, Mastomys natalensis, within irrigated rice and fallow field habitats at different time periods related to rice crop growth stages. Capture-Mark-Recapture data were collected for M. natalensis each month from June 2010 to May 2012, and both recruitment and survival were estimated in relation to land use (irrigated rice or fallow field) within the agro-ecosystem. Higher recruitment and survival were observed in rice fields than in fallow fields suggesting the relationship was compensatory when there was a higher abundance of food resources. In terms of management, farmers in the study area should implement management strategies in rice fields at both transplanting and maturity stages of crop growth in order to maintain recruitment and survival at low levels.The Zonal Agricultural Research and Development Funds (ZARDEF) through Eastern Zone.http://www.degruyter.com/view/j/mamm2017-03-30am2016Mammal Research InstituteZoology and Entomolog

Association of Forced Vital Capacity with the Developmental Gene NCOR2

Background Forced Vital Capacity (FVC) is an important predictor of all-cause mortality in the absence of chronic respiratory conditions. Epidemiological evidence highlights the role of early life factors on adult FVC, pointing to environmental exposures and genes affecting lung development as risk factors for low FVC later in life. Although highly heritable, a small number of genes have been found associated with FVC, and we aimed at identifying further genetic variants by focusing on lung development genes. Methods Per-allele effects of 24,728 SNPs in 403 genes involved in lung development were tested in 7,749 adults from three studies (NFBC1966, ECRHS, EGEA). The most significant SNP for the top 25 genes was followed-up in 46,103 adults (CHARGE and SpiroMeta consortia) and 5,062 children (ALSPAC). Associations were considered replicated if the replication p-value survived Bonferroni correction (p<0.002; 0.05/25), with a nominal p-value considered as suggestive evidence. For SNPs with evidence of replication, effects on the expression levels of nearby genes in lung tissue were tested in 1,111 lung samples (Lung eQTL consortium), with further functional investigation performed using public epigenomic profiling data (ENCODE). Results NCOR2-rs12708369 showed strong replication in children (p = 0.0002), with replication unavailable in adults due to low imputation quality. This intronic variant is in a strong transcriptional enhancer element in lung fibroblasts, but its eQTL effects could not be tested due to low imputation quality in the eQTL dataset. SERPINE2-rs6754561 replicated at nominal level in both adults (p = 0.036) and children (p = 0.045), while WNT16-rs2707469 replicated at nominal level only in adults (p = 0.026). The eQTL analyses showed association of WNT16-rs2707469 with expression levels of the nearby gene CPED1.We found no statistically significant eQTL effects for SERPINE2-rs6754561. Conclusions We have identified a new gene, NCOR2, in the retinoic acid signalling pathway pointing to a role of Vitamin A metabolism in the regulation of FVC. Our findings also support SERPINE2, a COPD gene with weak previous evidence of association with FVC, and suggest WNT16 as a further promising candidate

Spatial and temporal population dynamics of rodents in three geographically different regions in Africa: implication for ecologically-based rodent management

As part of a three-year study to develop ecologically-based rodent management (EBRM) in southern Africa, a capture–mark–recapture study was carried out in Tanzania, Namibia and Swaziland to establish the demographic patterns and population dynamics of rodents. Two study grids were established in each country. In Tanzania, ten species of rodents and one shrew (Crocidura sp.) were identified in the study area. The rodent species consisted of Mastomys natalensis, Aethomys chrysophilus, Arvicanthis neumanni, Gerbilliscus vicina, Acomys spinosissimus, Lemniscomys griselda, Lemniscomys zebra, Rattus rattus, Graphiurus sp. and Mus minutoides. Mastomys natalensis was dominant and contributed more than 70% of the captures. In Namibia, five species were captured, namely Mastomys natalensis, Gerbilliscus leucogaster, Saccostomus campestris, Mus minutoides and Steatomys pratensis. Mastomys natalensis contributed about 50% of the captures. In Swaziland, only M. natalensis was captured in the study grids. There was a clear pattern in the population dynamics, with breeding confined to the wet seasons in the three countries. Mastomys natalensis was the dominant pest species, for which EBRM should focus on. The highest population density of M. natalensis occurred during and after the rains, which coincided with the most susceptible phenological stage of crops. The breeding seasonality and density fluctuations observed in the three countries conform with observations made elsewhere in Africa, which support the hypothesis that rainfall events promote primary productivity on which murid rodents depend. Development of EBRM in these countries will be determined by the local conditions and how they influence the demographic processes of the rodent populations. EBRM should make use of the available ecological knowledge of the local rodent pest species and the focus should be on (ecological) management practices applicable at the community level including community based intensive trapping, field hygiene, removing cover and sources of food for rodents

A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium

Item does not contain fulltextVenous thromboembolism (VTE) is a common, heritable disease resulting in high rates of hospitalization and mortality. Yet few associations between VTE and genetic variants, all in the coagulation pathway, have been established. To identify additional genetic determinants of VTE, we conducted a two-stage genome-wide association study (GWAS) among individuals of European ancestry in the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) VTE consortium. The discovery GWAS comprised 1,618 incident VTE cases out of 44,499 participants from six community-based studies. Genotypes for genome-wide single-nucleotide polymorphisms (SNPs) were imputed to approximately 2.5 million SNPs in HapMap and association with VTE assessed using study-design appropriate regression methods. Meta-analysis of these results identified two known loci, in F5 and ABO. Top 1,047 tag SNPs (P </= 0.0016) from the discovery GWAS were tested for association in an additional 3,231 cases and 3,536 controls from three case-control studies. In the combined data from these two stages, additional genome-wide significant associations were observed on 4q35 at F11 (top SNP rs4253399, intronic to F11) and on 4q28 at FGG (rs6536024, 9.7 kb from FGG; P < 5.0 x 10(-13) for both). The associations at the FGG locus were not completely explained by previously reported variants. Loci at or near SUSD1 and OTUD7A showed borderline yet novel associations (P < 5.0 x 10(-6) ) and constitute new candidate genes. In conclusion, this large GWAS replicated key genetic associations in F5 and ABO, and confirmed the importance of F11 and FGG loci for VTE. Future studies are warranted to better characterize the associations with F11 and FGG and to replicate the new candidate associations