A new deep sea coralline sponge from Turks and Caicos Islands: <i>Willardia caicosensis</i> gen. <i>et</i> sp. nov. (Demospongiae: Hadromerida)

A new coralline sponge, Willardia caicosensis, assigned to the family Timeidae, is described from the deep fore reef off the Turks & Caicos Islands, tropical western Atlantic Ocean, where it is common at depths ranging from 100 to 119 m. Individuals vary up to 15-20 cm in width. The relatively thin aragonitic skeleton is covered with delicate pillars up to + 1 mm. The living tissue is restricted to the spaces between pillars and a thin sheet lying above the calcareous skeleton. Exhalant canals converge upon regularly spaced central oscules on the sponge surface. Siliceous spicules include tylostyles and amphiasters which are secondarily embedded in the aragonitic moiety of the skeleton. In addition, ultrastructural characters of thechoanocytes, such as periflagellar sleeves are typical of the Order Hadromerida. Two types of cells with dense spherules are abundant in the mesohyl: sperulous cells packed with large heterogeneous inclusions, protruding at the surface of the sponge, and glycocytes with smaller ovoid corpuscles, mainly grouped along the basal calcareous skeleton. Rough collagen fibrils extend in tracts from the base of the sponge to the ectosome. Sparse bacteria are scattered in the mesohyl

Cell cycle analysis of primary sponge cell cultures

Proliferation of sponge cells is generally measured via cell counts or viability assays. However, more insight into the proliferative state of a sponge cell population can be obtained from the distribution of the cells over the different phases of the cell cycle. Cell cycle distribution of sponge cells was measured via flow cytometry after staining the DNA with propidium iodide. The five sponges studied in this paper all showed a large fraction of cells in G1/G0 compared to G2/M and S, indicating that cells were not actively dividing. In addition, some sponges also showed a large apoptotic fraction, indicating cell death. Additional apoptosis measurements, based on caspase activity, showed that harvesting and dissociation of sponge tissue to initiate a primary cell culture was directly correlated with an increase in apoptotic cells. This indicates that for the development of cell cultures, more attention should be given to harvesting, dissociation, and quality of starting material. Finally, cultivation conditions used were ineffective for proliferation, since after 2 d of cultivating Haliclona oculata cells, most cells shifted towards the apoptotic fraction, indicating that cells were dying. For development of in vitro sponge cell cultures, flow cytometric cell cycle analysis is a useful method to assess the proliferative state of a sponge cell culture and can be used to validate improvements in harvesting and dissociation, to select sponges with good proliferative capacities and to study the influence of culture conditions for stimulating cell growth

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes

Over 95% of all metazoan (animal) species comprise the invertebrates, but very few genomes from these organisms have been sequenced. We have, therefore, formed a Global Invertebrate Genomics Alliance (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness. The GIGA Web site (http://giga.nova.edu) has been launched to facilitate this collaborative venture

The Global Invertebrate Genomics Alliance (GIGA). 2014. Developing Community Resources to Study Diverse Invertebrate Genomes

Over 95% of all metazoan (animal) species comprise the “invertebrates,” but very few genomes from these organisms have been sequenced. We have, therefore, formed a “Global Invertebrate Genomics Alliance” (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness

New data on lithistid sponges from the deep Florida shelf with description of a new species of Theonella

Most lithistids occur worldwide in deep-water environments, but can be found in some places in shallow water. They are not well known in the tropical western Atlantic, despite the fact that they were first described in the late 1800s. We report here two species of poorly known theonellid demosponges (Astrophorina), Discodermia dissoluta and Theonella atlantica, and one new species, Theonella wrightae, from the north-west, south-west and south Florida shelf. There is considerable variability in habitus, colour and spiculation in this species. If samples are taken randomly from different specimens and from functionally and structurally different locations on the sponge, the specimens could be mistakenly identified or individuals of the same species could be described as different species. This report increases the number of lithistid sponges reported from the tropical western Atlantic region to 30 species, but our unpublished data suggest a much higher number of species present in this region. It is also the second report of the relatively deep-water (81 m) occurrence of D. dissoluta that is mostly known from depths as shallow as 10–30 m

Lithistid sponges of the upper bathyal of Madeira, Selvagens and Canary Islands, with description of a new species

Desma-bearing sponges, also known as lithistids or rock sponges, are a group typical of bathyal environments throughout tropical and warm-temperate regions. In this study the lithistids collected in the course of the Harbor Branch Oceanographic Institute eastern Atlantic 1991 campaign to Madeira, Selvagens and the Canary Islands were identified and assigned to eight species, representing eight genera and five families. Several constitute new records for these islands and one is a new species of Isabella, a genus thus far only known from the Norfolk Ridge in New Caledonia, that is here described and illustrated. Some considerations are made in regards to the diversity and biogeographical affinities of the Atlanto-Mediterranean lithistid sponges