Calculating Ensemble Averaged Descriptions of Protein Rigidity without Sampling

Previous works have demonstrated that protein rigidity is related to thermodynamic stability, especially under conditions that favor formation of native structure. Mechanical network rigidity properties of a single conformation are efficiently calculated using the integer body-bar Pebble Game (PG) algorithm. However, thermodynamic properties require averaging over many samples from the ensemble of accessible conformations to accurately account for fluctuations in network topology. We have developed a mean field Virtual Pebble Game (VPG) that represents the ensemble of networks by a single effective network. That is, all possible number of distance constraints (or bars) that can form between a pair of rigid bodies is replaced by the average number. The resulting effective network is viewed as having weighted edges, where the weight of an edge quantifies its capacity to absorb degrees of freedom. The VPG is interpreted as a flow problem on this effective network, which eliminates the need to sample. Across a nonredundant dataset of 272 protein structures, we apply the VPG to proteins for the first time. Our results show numerically and visually that the rigidity characterizations of the VPG accurately reflect the ensemble averaged properties. This result positions the VPG as an efficient alternative to understand the mechanical role that chemical interactions play in maintaining protein stability

Trapping \u3ci\u3ePhyllophaga \u3c/i\u3espp. (Coleoptera: Scarabaeidae: Melolonthinae) in the United States and Canada using sex attractants.

The sex pheromone of the scarab beetle, Phyllophaga anxia, is a blend of the methyl esters of two amino acids, L-valine and L-isoleucine. A field trapping study was conducted, deploying different blends of the two compounds at 59 locations in the United States and Canada. More than 57,000 males of 61 Phyllophaga species (Coleoptera: Scarabaeidae: Melolonthinae) were captured and identified. Three major findings included: (1) widespread use of the two compounds [of the 147 Phyllophaga (sensu stricto) species found in the United States and Canada, males of nearly 40% were captured]; (2) in most species intraspecific male response to the pheromone blends was stable between years and over geography; and (3) an unusual pheromone polymorphism was described from P. anxia. Populations at some locations were captured with L-valine methyl ester alone, whereas populations at other locations were captured with L-isoleucine methyl ester alone. At additional locations, the L-valine methyl ester-responding populations and the L-isoleucine methyl ester-responding populations were both present, producing a bimodal capture curve. In southeastern Massachusetts and in Rhode Island, in the United States, P. anxia males were captured with blends of L-valine methyl ester and L-isoleucine methyl ester

Polymer blends for fuel cells based on SPEKK: effect of co-continuous morphologies on water sorption and ionic conductivit

Proton-exchange membranes (PEM), suitable for micro and small sized fuel cells, were obtained by blending sulfonated poly(ether ketone ketone) (SPEKK) polymers with different ionic exchange capacity (IEC). This approach was used to limit the amt. of swelling caused by water sorption without significantly decreasing the proton cond. of the membrane. In particular a membrane with a cocontinuous biphasic morphol. was obtained by blending two SPEKKs, with resp., an IEC equal to 1.2 and 2.08 in the wt. ratio 60/40, casted from 5% (w/v) solns. in dimethylacetamide. The effect of a cocontinuous morphol. on water sorption and proton cond. in comparison to neat SPEKK was investigated. In the range of temps. between 40° and 70°, which is typical for small and micro fuel cells conditions, it was found that the ratio of proton cond. to water sorption could be maximized. This has been attributed to the presence of percolative pathways for proton transport provided by the cocontinuous morphol. along with the constraint effect of the less sulfonated component on the overall capacity of swelling of the membrane