Microbial Maintenance: A Critical Review on Its Quantification

Microbial maintenance is an important concept in microbiology. Its quantification, however, is a subject of continuous debate, which seems to be caused by (1) its definition, which includes nongrowth components other than maintenance; (2) the existence of partly overlapping concepts; (3) the evolution of variables as constants; and (4) the neglect of cell death in microbial dynamics. The two historically most important parameters describing maintenance, the specific maintenance rate and the maintenance coefficient, are based on partly different nongrowth components. There is thus no constant relation between these parameters and previous equations on this subject are wrong. In addition, the partial overlap between these parameters does not allow the use of a simple combination of these parameters. This also applies for combinations of a threshold concentration with one of the other estimates of maintenance. Maintenance estimates should ideally explicitly describe each nongrowth component. A conceptual model is introduced that describes their relative importance and reconciles the various concepts and definitions. The sensitivity of maintenance on underlying components was analyzed and indicated that overall maintenance depends nonlinearly on relative death rates, relative growth rates, growth yield, and endogenous metabolism. This quantitative sensitivity analysis explains the felt need to develop growth-dependent adaptations of existing maintenance parameters, and indicates the importance of distinguishing the various nongrowth components. Future experiments should verify the sensitivity of maintenance components under cellular and environmental conditions

Membrane probe array: Technique development and observation of CO2 and CH4 diurnal oscillations in peat profile

The purpose of this study was to monitor the dynamics of gases such as CO2 and CH4 in a soil profile with sufficient temporal resolution to observe possible diurnal variations. A computer-controlled device called a membrane probes array (MPA) was developed that consisted of 9-12 individual membrane probes installed at various soil depths. Each probe was made of a stainless steel pipe with a 1 mm orifice covered with a silicone membrane. Soil gases diffuse through the membrane at a rate proportional to the ambient soil gas concentration. To measure diffusion rates, the probes are flushed with N-2 one-by-one at regular time intervals and accumulated gas is detected as a spike with IR and FID analyzers. The longer the period between flushings the higher the gas accumulation and the lower the detection limit for a particular soil gas. The developed MPA agreed well with conventional manual gas sampling in West-Siberian mesotrophic fen. In peat cores with intact Carex-Sphagnum vegetation incubated under constant temperature, water level and artificial light:dark (14: 10) cycles, regular diurnal oscillations of soil CO2 and CH4 occurred in the upper part of the peat core down to 19 cm. Gas content in the top layer (3 cm) grew during the light phase, and returned back during the dark phase. In layers further down in the soil, the same events were observed but with progressively increased time delay and lower amplitude. The obtained data agreed with the hypothesis that diurnal variations in soil CO2 and CH4 content are caused by periodic changes in intensity of root exudation that provide a major C- and energy source for soil microorganisms including methanogens. At a soil depth of 23 cm, where the peak of gas bubbles occurred, the signal for both gases became chaotic and not related to the light:dark cycle

Cellulose- and Xylan-Degrading Thermophilic Anaerobic Bacteria from Biocompost ▿ †

Nine thermophilic cellulolytic clostridial isolates and four other noncellulolytic bacterial isolates were isolated from self-heated biocompost via preliminary enrichment culture on microcrystalline cellulose. All cellulolytic isolates grew vigorously on cellulose, with the formation of either ethanol and acetate or acetate and formate as principal fermentation products as well as lactate and glycerol as minor products. In addition, two out of nine cellulolytic strains were able to utilize xylan and pretreated wood with roughly the same efficiency as for cellulose. The major products of xylan fermentation were acetate and formate, with minor contributions of lactate and ethanol. Phylogenetic analyses of 16S rRNA and glycosyl hydrolase family 48 (GH48) gene sequences revealed that two xylan-utilizing isolates were related to a Clostridium clariflavum strain and represent a distinct novel branch within the GH48 family. Both isolates possessed high cellulase and xylanase activity induced independently by either cellulose or xylan. Enzymatic activity decayed after growth cessation, with more-rapid disappearance of cellulase activity than of xylanase activity. A mixture of xylan and cellulose was utilized simultaneously, with a significant synergistic effect observed as a reduction of lag phase in cellulose degradation

Skew-Laplace and cell-size distribution in microbial axenic cultures: statistical assessment and biological interpretation

We report a skew-Laplace statistical analysis of both flow cytometry scatters and cell size from microbial strains primarily grown in batch cultures, others in chemostat cultures and bacterial aquatic populations. Cytometry scatters best fit the skew-Laplace distribution while cell size as assessed by an electronic particle analyzer exhibited a moderate fitting. Unlike the cultures, the aquatic bacterial communities clearly do not fit to a skew-Laplace distribution. Due to its versatile nature, the skew-Laplace distribution approach offers an easy, efficient, and powerful tool for distribution of frequency analysis in tandem with the flow cytometric cell sorting

Biotic controls on CO2 and CH4 exchange in wetlands - a closed environment study

Wetlands are significant sources of the important greenhouse gas CH4. Here we explore the use of an experimental system developed for the determination of continuous fluxes of CO2 and CH4 in closed ecosystem monoliths including the capture of (CO2)-C-14 and (CH4)-C-14 following pulse labelling with (CO2)-C-14. We show that, in the ecosystem studied, ebullition (bubble emission) may account for 18 to 50% of the total CH4 emission, representing fluxes that have been difficult to estimate accurately in the past. Furthermore, using plant removal and C-14 labelling techniques, we use the system to detail the direct influence of vascular plants on CH4 emission. This influence is observed to be dependent on the amount of vascular plants present. The results that may be produced using the presented experimental set-up have implications for an improved understanding of wetland ecosystem/atmosphere interactions, including possible feedback effects on climate change. In recent years much attention has been devoted to ascertaining and subsequently using the relationship between net ecosystem productivity and CH4 emission as a basis for extrapolation of fluxes across large areas. The experimental system presented may be used to study the complex relationship between vascular plants and CH4 emission and here we show examples of how this may vary considerably in nature between and even within ecosystems