Modified group projectors: tight binding method

Modified group projector technique for induced representations is a powerful tool for calculation and symmetry quantum numbers assignation of a tight binding Hamiltonian energy bands of crystals. Namely, the induced type structure of such a Hamiltonian enables efficient application of the procedure: only the interior representations of the orbit stabilizers are to be considered. Then the generalized Bloch eigen functions are obtained naturally by the expansion to the whole state space. The method is applied to the electronic pi-bands of the single wall carbon nanotubes: together with dispersion relations, their complete symmetry assignation by the full symmetry (line) groups and the corresponding symmetry-adapted eigen function are found.Comment: 10 pages 1 figur

Group projector generalization of dirac-heisenberg model

The general form of the operators commuting with the ground representation (appearing in many physical problems within single particle approximation) of the group is found. With help of the modified group projector technique, this result is applied to the system of identical particles with spin independent interaction, to derive the Dirac-Heisenberg hamiltonian and its effective space for arbitrary orbital occupation numbers and arbitrary spin. This gives transparent insight into the physical contents of this hamiltonian, showing that formal generalizations with spin greater than 1/2 involve nontrivial additional physical assumptions.Comment: 10 page

Nonequilibrium electron spin polarization in a double quantum dot. Lande mechanism

In moderately strong magnetic fields, the difference in Lande g-factors in each of the dots of a coupled double quantum dot device may induce oscillations between singlet and triplet states of the entangled electron pair and lead to a nonequilibrium electron spin polarization. We will show that this polarization may partially survive the rapid inhomogeneous decoherence due to random nuclear magnetic fields.Comment: New version contains figures. New title better reflects the content of the pape

Detailed characterization of the O-linked glycosylation of the neuropilin-1 c/MAM-domain

Neuropilins are involved in angiogenesis and neuronal development. The membrane proximal domain of neuropilin-1, called c or MAM domain based on its sequence conservation, has been implicated in neuropilin oligomerization required for its function. The c/MAM domain of human neuropilin-1 has been recombinantly expressed to allow for investigation of its propensity to engage in molecular interactions with other protein or carbohydrate components on a cell surface. We found that the c/MAM domain was heavily O-glycosylated with up to 24 monosaccharide units in the form of disialylated core 1 and core 2 O-glycans. Attachment sites were identified on the chymotryptic c/MAM peptide ETGATEKPTVIDSTIQSEFPTY by electron-transfer dissociation mass spectrometry (ETD-MS/MS). For highly glycosylated species consisting of carbohydrate to about 50 %, useful results could only be obtained upon partial desialylation. ETD-MS/MS revealed a hierarchical order of the initial O-GalNAc addition to the four different glycosylation sites. These findings enable future functional studies about the contribution of the described glycosylations in neuropilin-1 oligomerization and the binding to partner proteins as VEGF or galectin-1. As a spin-off result the sialidase from Clostridium perfringens turned out to discriminate between galactose- and N-acetylgalactosamine-linked sialic acid

Irreducible Representations of Diperiodic Groups

The irreducible representations of all of the 80 diperiodic groups, being the symmetries of the systems translationally periodical in two directions, are calculated. To this end, each of these groups is factorized as the product of a generalized translational group and an axial point group. The results are presented in the form of the tables, containing the matrices of the irreducible representations of the generators of the groups. General properties and some physical applications (degeneracy and topology of the energy bands, selection rules, etc.) are discussed.Comment: 30 pages, 5 figures, 28 tables, 18 refs, LaTex2.0

Langevin Thermostat for Rigid Body Dynamics

We present a new method for isothermal rigid body simulations using the quaternion representation and Langevin dynamics. It can be combined with the traditional Langevin or gradient (Brownian) dynamics for the translational degrees of freedom to correctly sample the NVT distribution in a simulation of rigid molecules. We propose simple, quasi-symplectic second-order numerical integrators and test their performance on the TIP4P model of water. We also investigate the optimal choice of thermostat parameters.Comment: 15 pages, 13 figures, 1 tabl

Towards Supergravity Duals of Chiral Symmetry Breaking in Sasaki-Einstein Cascading Quiver Theories

We construct a first order deformation of the complex structure of the cone over Sasaki-Einstein spaces Y^{p,q} and check supersymmetry explicitly. This space is a central element in the holographic dual of chiral symmetry breaking for a large class of cascading quiver theories. We discuss a solution describing a stack of N D3 branes and M fractional D3 branes at the tip of the deformed spaces.Comment: 28 pages, no figures. v2: typos, references and a note adde

Allelomimesis as universal clustering mechanism for complex adaptive systems

Animal and human clusters are complex adaptive systems and many are organized in cluster sizes $s$ that obey the frequency-distribution $D(s)\propto s^{-\tau}$. Exponent $\tau$ describes the relative abundance of the cluster sizes in a given system. Data analyses have revealed that real-world clusters exhibit a broad spectrum of $\tau$-values, $0.7\textrm{(tuna fish schools)}\leq\tau\leq 2.95\textrm{(galaxies)}$. We show that allelomimesis is a fundamental mechanism for adaptation that accurately explains why a broad spectrum of $\tau$-values is observed in animate, human and inanimate cluster systems. Previous mathematical models could not account for the phenomenon. They are hampered by details and apply only to specific systems such as cities, business firms or gene family sizes. Allelomimesis is the tendency of an individual to imitate the actions of its neighbors and two cluster systems yield different $\tau$ values if their component agents display different allelomimetic tendencies. We demonstrate that allelomimetic adaptation are of three general types: blind copying, information-use copying, and non-copying. Allelomimetic adaptation also points to the existence of a stable cluster size consisting of three interacting individuals.Comment: 8 pages, 5 figures, 2 table