BioTools at UMassMed

Presentation to science librarians about the BioTools site (http://biotools.umassmed.edu/), a resource of tools for bioinformatics for the five schools of the University of Massachusetts System

Coherent Transport Through a Quadruple Point in a Few Electron Triple Dot

A few electron double electrostatic lateral quantum dot can be transformed into a few electron triple quantum dot by applying a different combination of gate voltages. Quadruple points have been achieved at which all three dots are simultaneously on resonance. At these special points in the stability diagram four occupation configurations are possible. Both charge detection and transport experiments have been performed on this device. In this short paper we present data and confirm that transport is coherent by observing a Pi phase shift in magneto-conductance oscillations as one passes through the quadruple point.Comment: To be published in ICPS Conf. Proceedings 200

Little Ice Age abruptly triggered by intrusion of Atlantic waters into the Nordic Seas

The Little Ice Age (LIA) was one of the coldest periods of the postglacial period in the Northern Hemisphere. Although there is increasing evidence that this time interval was associated with weakening of the subpolar gyre (SPG), the sequence of events that led to its weakened state has yet to be explained. Here, we show that the LIA was preceded by an exceptional intrusion of warm Atlantic water into the Nordic Seas in the late 1300s. The intrusion was a consequence of persistent atmospheric blocking over the North Atlantic, linked to unusually high solar activity. The warmer water led to the breakup of sea ice and calving of tidewater glaciers; weakening of the blocking anomaly in the late 1300s allowed the large volume of ice that had accumulated to be exported into the North Atlantic. This led to a weakening of the SPG, setting the stage for the subsequent LIA

Eliminating crystals in non-oxide optical fiber preforms and optical fibers

A method is provided for eliminating crystals in non-oxide optical fiber preforms as well as optical fibers drawn therefrom. The optical-fiber-drawing axis of the preform is aligned with the force of gravity. A magnetic field is applied to the preform as it is heated to at least a melting temperature thereof. The magnetic field is applied in a direction that is parallel to the preform's optical-fiber-drawing axis. The preform is then cooled to a temperature that is less than a glass transition temperature of the preform while the preform is maintained in the magnetic field. When the processed preform is to have an optical fiber drawn therefrom, the preform's optical-fiber-drawing axis is again aligned with the force of gravity and a magnetic field is again applied along the axis as the optical fiber is drawn from the preform

Iridovirus infection of cell cultures from the Diaprepes root weevil, Diaprepes abbreviatus

We here report the development and viral infection of a Diaprepes root weevil cell culture. Embryonic tissues of the root weevil were used to establish cell cultures for use in screening viral pathogens as potential biological control agents. Tissues were seeded into a prepared solution of insect medium and kept at a temperature of 24°C. The cell culture had primarily fibroblast-like morphology with some epithelial monolayers. Root weevil cells were successfully infected in vitro Abbreviation: / IIV-6: Invertebrate Iridescent Virus

Urbanization affects how people perceive and benefit from ecosystem service bundles in coastal communities of the Global South

Urbanization profoundly transforms ecosystems and the bundles of services they provide to people. The relationship between urbanization and how ecosystem services are produced together to form bundles has received increased research interest. However, there is limited understanding of how people’s perceptions of the benefits they receive from ecosystem service bundles change with urbanization, particularly in the Global South. Addressing this research gap is critical given perceptions influence how people relate to, use and manage their environment. We used a paired sampling design to contrast urban and rural dwellers’ perceptions of ecosystem service bundles associated with local ecosystems in the Solomon Islands, a rapidly urbanizing Small Island Developing State. Interviews from 200 households revealed that urbanization simplified the composition of perceived ecosystem service bundles. Contributions of provisioning and some cultural ecosystem services were reduced in bundles in urban areas, indicating a decrease in the diversity of experiences of nature and ecosystems providing those experiences. Examining changes in perceived ecosystem service bundles offers a valuable perspective on the implications of social-ecological change for ecosystem service demand and human wellbeing. Our approach presents a novel and simple way to identify and analyse bundles, providing insights into how and where people benefit from nature

Schubert Polynomials for the affine Grassmannian of the symplectic group

We study the Schubert calculus of the affine Grassmannian Gr of the symplectic group. The integral homology and cohomology rings of Gr are identified with dual Hopf algebras of symmetric functions, defined in terms of Schur's P and Q-functions. An explicit combinatorial description is obtained for the Schubert basis of the cohomology of Gr, and this is extended to a definition of the affine type C Stanley symmetric functions. A homology Pieri rule is also given for the product of a special Schubert class with an arbitrary one.Comment: 45 page

The influence of the long-lived quantum Hall potential on the characteristics of quantum devices

Novel hysteretic effects are reported in magneto-transport experiments on lateral quantum devices. The effects are characterized by two vastly different relaxation times (minutes and days). It is shown that the observed phenomena are related to long-lived eddy currents. This is confirmed by torsion-balance magnetometry measurements of the same 2-dimensional electron gas (2DEG) material. These observations show that the induced quantum Hall potential at the edges of the 2DEG reservoirs influences transport through the devices, and have important consequences for the magneto-transport of all lateral quantum devices.Comment: 5 pages, 4 figure

Comparing Ecosystem Service preferences between urban and rural dwellers

Urbanization can profoundly alter socioecological relationships, but its influence on how people perceive and value ecosystem services (ES) is poorly understood. We reviewed an emerging literature in which sociocultural valuation of ES is compared among urban and rural dwellers. This research suggests that, although regulating and cultural ES were highly valued by both rural and urban dwellers, urban dwellers tended to value provisioning ES less than rural dwellers did. Differences in ES valuation could result from different experiences, uses, and needs for ES of urban and rural dwellers. We also identified two key gaps in the literature that relate to understanding how diverse ES contribute differently to the well-being of rural and urban populations (and the relevance of these differences for environmental education and policy) and the changing roles of ES in developing countries and vulnerable ecosystems, such as small islands, that face pressing environmental, social, and economic challenges