On the positive eigenvalues and eigenvectors of a non-negative matrix

The paper develops the general theory for the items in the title, assuming that the matrix is countable and cofinal.Comment: Version 2 allows the matrix to have zero row(s) and rows with infinitely many non-zero entries. In addition the introduction has been rewritte

Acoustic backscattering from a wind-driven water surface

This paper reports an attempt to measure the asymmetry of wind-generated water waves by using acoustical methods. A 40-foot wind-tunnel water flume provided a controlled water surface that was insonified from above at 162 kHz with pulses 30 µsec in duration (5 cycles). The scattered-pressure amplitude pulses were analyzed statistically as a function of the shear stress produced at the water surface by the wind...

Development of Sstreamflow Projections Under Changing Climate Conditions Over Colorado River Basin Headwaters

The current drought over the Colorado River Basin has raised concerns that the US Department of the Interior, Bureau of Reclamation (Reclamation) may impose water shortages over the lower portion of the basin for the first time in history. The guidelines that determine levels of shortage are affected by relatively short-term (3 to 7 month) forecasts determined by the Colorado Basin River Forecast Center (CBRFC) using the National Weather Service (NWS) River Forecasting System (RFS) hydrologic model. While these forecasts by the CBRFC are useful, water managers within the basin are interested in long-term projections of streamflow, particularly under changing climate conditions. In this study, a bias-corrected, statistically downscaled dataset of projected climate is used to force the NWS RFS utilized by the CBRFC to derive projections of streamflow over the Green, Gunnison, and San Juan River headwater basins located within the Colorado River Basin. This study evaluates the impact of changing climate to evapotranspiration rates and contributes to a better understanding of how hydrologic processes change under varying climate conditions. The impact to evapotranspiration rates is taken into consideration and incorporated into the development of streamflow projections over Colorado River headwater basins in this study. Additionally, the NWS RFS is modified to account for impacts to evapotranspiration due to changing temperature over the basin. Adjusting evapotranspiration demands resulted in a 6% to 13% average decrease in runoff over the Gunnison River Basin when compared to static evapotranspiration rates. Streamflow projections derived using projections of future climate and the NWS RFS provided by the CBRFC resulted in decreased runoff in 2 of the 3 basins considered. Over the Gunnison and San Juan River basins, a 10% to 15% average decrease in basin runoff is projected through the year 2099. However, over the Green River basin, a 5% to 8% increase in basin runoff is projected through 2099. Evidence of nonstationary behavior is apparent over the Gunnison and San Juan River basins

Development of Streamflow Projections Under Changing Climate Conditions Over Colorado River Basin Headwaters

The current drought over the Colorado River Basin has raised concerns that the US Department of the Interior, Bureau of Reclamation (Reclamation) may impose water shortages over the lower portion of the basin for the first time in history. The guidelines that determine levels of shortage are affected by forecasts determined by the Colorado Basin River Forecast Center (CBRFC). While these forecasts by the CBRFC are useful, water managers within the basin are interested in long-term projections of streamflow, particularly under changing climate conditions. In this study, a bias-corrected, statistically downscaled dataset of projected climate is used to force a hydrologic model utilized by the CBRFC to derive projections of streamflow over the Green, Gunnison, and San Juan River headwater basins located within the Colorado River Basin. This study evaluates the impact of changing climate to evapotranspiration rates. The impact to evapotranspiration rates is taken into consideration and incorporated into the development of streamflow projections over Colorado River headwater basins in this study. Additionally, the CBRFC hydrologic model is modified to account for impacts to evapotranspiration due to changing temperature over the basin. Adjusting evapotranspiration demands over the Gunnison resulted in a 6% to 13% average decrease in runoff over the Gunnison River Basin when compared to static evapotranspiration rates. Streamflow projections derived using projections of future climate and the CBRFC’s hydrologic model resulted in decreased runoff in 2 of the 3 basins considered. Over the Gunnison and San Juan River basins, a 10% to 15% average decrease in basin runoff is projected through the year 2099. However, over the Green River basin, a 5% to 8% increase in basin runoff is projected through 2099. Evidence of nonstationary behavior is apparent over the Gunnison and San Juan River basins

DNA replication stress restricts ribosomal DNA copy number

Ribosomal RNAs (rRNAs) in budding yeast are encoded by ~100–200 repeats of a 9.1kb sequence arranged in tandem on chromosome XII, the ribosomal DNA (rDNA) locus. Copy number of rDNA repeat units in eukaryotic cells is maintained far in excess of the requirement for ribosome biogenesis. Despite the importance of the repeats for both ribosomal and non-ribosomal functions, it is currently not known how “normal” copy number is determined or maintained. To identify essential genes involved in the maintenance of rDNA copy number, we developed a droplet digital PCR based assay to measure rDNA copy number in yeast and used it to screen a yeast conditional temperature-sensitive mutant collection of essential genes. Our screen revealed that low rDNA copy number is associated with compromised DNA replication. Further, subculturing yeast under two separate conditions of DNA replication stress selected for a contraction of the rDNA array independent of the replication fork blocking protein, Fob1. Interestingly, cells with a contracted array grew better than their counterparts with normal copy number under conditions of DNA replication stress. Our data indicate that DNA replication stresses select for a smaller rDNA array. We speculate that this liberates scarce replication factors for use by the rest of the genome, which in turn helps cells complete DNA replication and continue to propagate. Interestingly, tumors from mini chromosome maintenance 2 (MCM2)-deficient mice also show a loss of rDNA repeats. Our data suggest that a reduction in rDNA copy number may indicate a history of DNA replication stress, and that rDNA array size could serve as a diagnostic marker for replication stress. Taken together, these data begin to suggest the selective pressures that combine to yield a “normal” rDNA copy number

The antisense oligonucleotide nusinersen for treatment of spinal muscular atrophy

Spinal muscular atrophy (SMA) is a rare, autosomal recessive neuromuscular degenerative disease characterized by loss of spinal cord motor neurons leading to progressive muscle wasting. The most common pathology results from a homozygous disruption in the survival motor neuron 1 (SMN1) gene on chromosome 5q13 via deletion, conversion, or mutation. SMN2 is a near duplicate of SMN1 that can produce full-length SMN mRNA transcripts, but its overall production capability of these mRNA transcripts is lower than that seen in SMN1. This leads to lower levels of functional SMN protein within motor neurons. The FDA approved nusinersen in December 2016 to treat SMA associated with SMN1 gene mutation. It is administered directly to the central nervous system by intrathecal injection. An antisense oligonucleotide (ASO) drug, nusinersen, provides an upcoming and promising treatment option for SMA and represents a novel pharmacological approach with a mechanism of action relevant for other neurodegenerative disorders. Nusinersen begins with four initial loading doses that are followed by three maintenance doses per year. Three major studies (CHERISH, ENDEAR, and NURTURE) have shown to improve motor function in early and late-onset individuals and reduce the chances of ventilator requirements in pre-symptomatic infants. Studies investigating the timing of drug delivery in mouse models of SMA report the best outcomes when drugs are delivered early before any significant motor function is lost. Nusinersen is a novel therapeutic approach with consistent results in all three studies and is proof of the novel concept for treating SMA and other neurodegenerative disorders in the future

Human immunodeficiency virus type 1, human protein interaction database at NCBI

The ‘Human Immunodeficiency Virus Type 1 (HIV-1), Human Protein Interaction Database’, available through the National Library of Medicine at www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions, was created to catalog all interactions between HIV-1 and human proteins published in the peer-reviewed literature. The database serves the scientific community exploring the discovery of novel HIV vaccine candidates and therapeutic targets. To facilitate this discovery approach, the following information for each HIV-1 human protein interaction is provided and can be retrieved without restriction by web-based downloads and ftp protocols: Reference Sequence (RefSeq) protein accession numbers, Entrez Gene identification numbers, brief descriptions of the interactions, searchable keywords for interactions and PubMed identification numbers (PMIDs) of journal articles describing the interactions. Currently, 2589 unique HIV-1 to human protein interactions and 5135 brief descriptions of the interactions, with a total of 14 312 PMID references to the original articles reporting the interactions, are stored in this growing database. In addition, all protein–protein interactions documented in the database are integrated into Entrez Gene records and listed in the ‘HIV-1 protein interactions’ section of Entrez Gene reports. The database is also tightly linked to other databases through Entrez Gene, enabling users to search for an abundance of information related to HIV pathogenesis and replication