“Cape Fear”—A Hybrid Hillslope Plot for Monitoring Hydrological Processes

Innovative experimental field designs and methods are instrumental for dissecting hydrological processes in hillslopes. However, experimental studies at the catchment scale are rarely affordable to most research groups, and laboratory flumes are oversimplified to reproduce natural phenomena. In this work, we present the innovative “hybrid” experimental plot of Cape Fear, which features controllable water fluxes and boundary conditions, but it is directly exposed to external atmospheric agents. We demonstrate the suitability of Cape Fear to study hydrological phenomena through a feasibility test, whereby the response of the plot to a natural storm is in line with the well-known hydrological response of natural hillslopes. Future studies will address the influence of the plot geometry parameters on rill formation

Different Modes of Retrovirus Restriction by Human APOBEC3A and APOBEC3G In Vivo

The apolipoprotein B editing complex 3 (A3) cytidine deaminases are among the most highly evolutionarily selected retroviral restriction factors, both in terms of gene copy number and sequence diversity. Primate genomes encode seven A3 genes, and while A3F and 3G are widely recognized as important in the restriction of HIV, the role of the other genes, particularly A3A, is not as clear. Indeed, since human cells can express multiple A3 genes, and because of the lack of an experimentally tractable model, it is difficult to dissect the individual contribution of each gene to virus restriction in vivo. To overcome this problem, we generated human A3A and A3G transgenic mice on a mouse A3 knockout background. Using these mice, we demonstrate that both A3A and A3G restrict infection by murine retroviruses but by different mechanisms: A3G was packaged into virions and caused extensive deamination of the retrovirus genomes while A3A was not packaged and instead restricted infection when expressed in target cells. Additionally, we show that a murine leukemia virus engineered to express HIV Vif overcame the A3G-mediated restriction, thereby creating a novel model for studying the interaction between these proteins. We have thus developed an in vivo system for understanding how human A3 proteins use different modes of restriction, as well as a means for testing therapies that disrupt HIV Vif-A3G interactions.United States. Public Health Service (Grant R01-AI-085015)United States. Public Health Service (Grant T32-CA115299 )United States. Public Health Service (Grant F32-AI100512

Multifunctionality of Agriculture Products: Towards Collaborative Policy Guidelines on Sustainable Agro-Related Fuel Development

This is an Accepted Manuscript of an article published by Taylor & Francis in Biofuels on 23 January 2017, available online: http://www.tandfonline.com/doi/full/10.1080/17597269.2017.1278930.The primacy of food security overrides that of energy. This is a reasoned view under the United Nations rights-based theories and practice. Within this context, there are voluntary guidelines according to which countries must secure an adequate food supply. Nevertheless, agro-related fuel has recently attracted scientific and commercial attention, following revolutionary thinking concerning the multifunctionality nature of agriculture products and the innovative use of crop resources as conduits in building our energy security and promoting economic growth. Consequently, many countries may be facing the need for strategic decision-making in developing an agro-related fuel programme, given the lack of a credible global framework to inform policy approaches. On the back of this complexity, a key objective of this paper is to provide a critical assessment of whether a credible global collaborative framework can bring much-needed certainty to enable developing countries to weigh up the importance and risks involved and to manage all of the related biodiversity intricacies connected to agro-related policy development in relation to the realisation of sustainable food security.Peer reviewedFinal Accepted Versio

Increased food production and reduced water use through optimized crop distribution

Growing demand for agricultural commodities for food, fuel and other uses is expected to be met through an intensification of production on lands that are currently under cultivation. Intensification typically entails investments in modern technology - such as irrigation or fertilizers - and increases in cropping frequency in regions suitable for multiple growing seasons. Here we combine a process-based crop water model with maps of spatially interpolated yields for 14 major food crops to identify potential differences in food production and water use between current and optimized crop distributions. We find that the current distribution of crops around the world neither attains maximum production nor minimum water use. We identify possible alternative configurations of the agricultural landscape that, by reshaping the global distribution of crops within current rainfed and irrigated croplands based on total water consumption, would feed an additional 825 million people while reducing the consumptive use of rainwater and irrigation water by 14% and 12%, respectively. Such an optimization process does not entail a loss of crop diversity, cropland expansion or impacts on nutrient and feed availability. It also does not necessarily invoke massive investments in modern technology that in many regions would require a switch from smallholder farming to large-scale commercial agriculture with important impacts on rural livelihoods

Class II Transactivator (CIITA) Enhances Cytoplasmic Processing of HIV-1 Pr55Gag

The Pr55(gag) (Gag) polyprotein of HIV serves as a scaffold for virion assembly and is thus essential for progeny virion budding and maturation. Gag localizes to the plasma membrane (PM) and membranes of late endosomes, allowing for release of infectious virus directly from the cell membrane and/or upon exocytosis. The host factors involved in Gag trafficking to these sites are largely unknown. Upon activation, CD4+ T cells, the primary target of HIV infection, express the class II transcriptional activator (CIITA) and therefore the MHC class II isotype, HLA-DR. Similar to Gag, HLA-DR localizes to the PM and at the membranes of endosomes and specialized vesicular MHC class II compartments (MIICs). In HIV producer cells, transient HLA-DR expression induces intracellular Gag accumulation and impairs virus release.Here we demonstrate that both stable and transient expression of CIITA in HIV producer cells does not induce HLA-DR-associated intracellular retention of Gag, but does increase the infectivity of virions. However, neither of these phenomena is due to recapitulation of the class II antigen presentation pathway or CIITA-mediated transcriptional activation of virus genes. Interestingly, we demonstrate that CIITA, apart from its transcriptional effects, acts cytoplasmically to enhance Pr160(gag-pol) (Gag-Pol) levels and thereby the viral protease and Gag processing, accounting for the increased infectivity of virions from CIITA-expressing cells.This study demonstrates that CIITA enhances HIV Gag processing, and provides the first evidence of a novel, post-transcriptional, cytoplasmic function for a well-known transactivator