XMMPZCAT: A catalogue of photometric redshifts for X-ray sources

The third version of the XMM-Newton serendipitous catalogue (3XMM), containing almost half million sources, is now the largest X-ray catalogue. However, its full scientific potential remains untapped due to the lack of distance information (i.e. redshifts) for the majority of its sources. Here we present XMMPZCAT, a catalogue of photometric redshifts (photo-z) for 3XMM sources. We searched for optical counterparts of 3XMM-DR6 sources outside the Galactic plane in the SDSS and Pan-STARRS surveys, with the addition of near- (NIR) and mid-infrared (MIR) data whenever possible (2MASS, UKIDSS, VISTA-VHS, and AllWISE). We used this photometry data set in combination with a training sample of 5157 X-ray selected sources and the MLZ-TPZ package, a supervised machine learning algorithm based on decision trees and random forests for the calculation of photo-z. We have estimated photo-z for 100,178 X-ray sources, about 50% of the total number of 3XMM sources (205,380) in the XMM-Newton fields selected to build this catalogue (4208 out of 9159). The accuracy of our results highly depends on the available photometric data, with a rate of outliers ranging from 4% for sources with data in the optical+NIR+MIR, up to $\sim$40% for sources with only optical data. We also addressed the reliability level of our results by studying the shape of the photo-z probability density distributions.Comment: 16 pages, 14 figures, A&A accepte

Interlayer hybridization and moir\'e superlattice minibands for electrons and excitons in heterobilayers of transition-metal dichalcogenides

Geometrical moir\'e patterns, generic for almost aligned bilayers of two-dimensional (2D) crystals with similar lattice structure but slightly different lattice constants, lead to zone folding and miniband formation for electronic states. Here, we show that moir\'e superlattice (mSL) effects in $\mathrm{MoSe}_2/\mathrm{WS}_2$ and $\mathrm{MoTe}_2/\mathrm{MoSe}_2$ heterobilayers that feature alignment of the band edges are enhanced by resonant interlayer hybridization, and anticipate similar features in twisted homobilayers of TMDs, including examples of narrow minibands close to the actual band edges. Such hybridization determines the optical activity of interlayer excitons in transition-metal dichalcogenide (TMD) heterostructures, as well as energy shifts in the exciton spectrum. We show that the resonantly hybridized exciton (hX) energy should display a sharp modulation as a function of the interlayer twist angle, accompanied by additional spectral features caused by umklapp electron-photon interactions with the mSL. We analyze the appearance of resonantly enhanced mSL features in absorption and emission of light by the interlayer exciton hybridization with both intralayer A and B excitons in $\mathrm{MoSe}_2/\mathrm{WS}_2$, $\mathrm{MoTe}_2/\mathrm{MoSe}_2$, $\mathrm{MoSe}_2/\mathrm{MoS}_2$, $\mathrm{WS}_2/\mathrm{MoS}_2$, and $\mathrm{WSe}_2/\mathrm{MoSe}_2$.Comment: Final published version, with updated title and abstract, minor corrections to equations, and 4 new figures adde

Real-time reverse transcription polymerase chain reaction development for rapid detection of Tomato brown rugose fruit virus and comparison with other techniques

Background: Tomato brown rugose fruit virus (ToBRFV) is a highly infectious tobamovirus that causes severe disease in tomato (Solanum lycopersicum L.) crops. In Italy, the first ToBRFV outbreak occurred in 2018 in several provinces of the Sicily region. ToBRFV outbreak represents a serious threat for tomato crops in Italy and the Mediterranean Basin. Methods: Molecular and biological characterisation of the Sicilian ToBRFV ToB-SIC01/19 isolate was performed, and a sensitive and specific Real-time RT-PCR TaqMan minor groove binder probe method was developed to detect ToBRFV in infected plants and seeds. Moreover, four different sample preparation procedures (immunocapture, total RNA extraction, direct crude extract and leaf-disk crude extract) were evaluated. Results: The Sicilian isolate ToB-SIC01/19 (6,391 nt) showed a strong sequence identity with the isolates TBRFV-P12-3H and TBRFV-P12-3G from Germany, Tom1-Jo from Jordan and TBRFV-IL from Israel. The ToB-SIC01/19 isolate was successfully transmitted by mechanical inoculations in S. lycopersicum L. and Capsicum annuum L., but no transmission occurred in S. melongena L. The developed real-time RT-PCR, based on the use of a primer set designed on conserved sequences in the open reading frames3, enabled a reliable quantitative detection. This method allowed clear discrimination of ToBRFV from other viruses belonging to the genus Tobamovirus, minimising false-negative results. Using immunocapture and total RNA extraction procedures, the real-time RT-PCR and end-point RT-PCR gave the same comparable results. Using direct crude extracts and leaf-disk crude extracts, the end-point RT-PCR was unable to provide a reliable result. This developed highly specific and sensitive real-time RT-PCR assay will be a particularly valuable tool for early ToBRFV diagnosis, optimising procedures in terms of costs and time

A numerical study of planar arrays of correlated spin islands

We present our analysis of a system of interacting islands of XY spins on a triangular lattice that has been introduced a few years ago by Eley et al. to account for the phenomenology in experiments on tunable arrays of proximity coupled long superconductor-normal metal-superconductor junctions. The main features of the model are the separation of a local and a global interaction energy scale and the mesoscopic character of the spin islands. Upon lowering the temperature the model undergoes two crossovers corresponding to an increasing phase coherence on a single island and to the onset of global coherence across the array; the latter is a thermodynamical phase transition in the Ising universality class. The dependence of the second transition on the island edge-to-edge spacing is related to the proximity-effect of the coupling constant.Comment: 6 pages, 5 figures, accepted for publication in EPJ

An obscured AGN population hidden in the VIPERS galaxies: identification through spectral energy distribution decomposition

The detection of X-ray emission constitutes a reliable and efficient tool for the selection of Active Galactic Nuclei (AGNs), although it may be biased against the most heavily absorbed AGNs. Simple mid-IR broad-band selection criteria identify a large number of luminous and absorbed AGNs, yet again host contamination could lead to non-uniform and incomplete samples. Spectral Energy Distribution (SED) decomposition is able to decouple the emission from the AGN versus that from star-forming regions, revealing weaker AGN components. We aim to identify the obscured AGN population in the VIPERS survey in the CFHTLS W1 field through SED modelling. We construct SEDs for 6,860 sources and identify 160 AGNs at a high confidence level using a Bayesian approach. Using optical spectroscopy, we confirm the nature of ~85% of the AGNs. Our AGN sample is highly complete (~92%) compared to mid-IR colour selected AGNs, including a significant number of galaxy-dominated systems with lower luminosities. In addition to the lack of X-ray emission (80%), the SED fitting results suggest that the majority of the sources are obscured. We use a number of diagnostic criteria in the optical, infrared and X-ray regime to verify these results. Interestingly, only 35% of the most luminous mid-IR selected AGNs have X-ray counterparts suggesting strong absorption. Our work emphasizes the importance of using SED decomposition techniques to select a population of type II AGNs, which may remain undetected by either X-ray or IR colour surveys.Comment: Accepted for publication in MNRAS in May 4, 2020. 18 figures, 3 tables

Spectroscopic Signatures of Electronic Excitations in Raman Scattering in Thin Films of Rhombohedral Graphite

Rhombohedral graphite features peculiar electronic properties, including persistence of low-energy surface bands of a topological nature. Here, we study the contribution of electron-hole excitations towards inelastic light scattering in thin films of rhombohedral graphite. We show that, in contrast to the featureless electron-hole contribution towards Raman spectrum of graphitic films with Bernal stacking, the inelastic light scattering accompanied by electron-hole excitations in crystals with rhombohedral stacking produces distinct features in the Raman signal which can be used both to identify the stacking and to determine the number of layers in the film.Comment: 15 pages in preprint format, 4 figures, accepted versio

Electronic Raman Scattering in Twistronic Few-Layer Graphene

We study electronic contribution to the Raman scattering signals of two-, three- and four-layer graphene with layers at one of the interfaces twisted by a small angle with respect to each other. We find that the Raman spectra of these systems feature two peaks produced by van Hove singularities in moir\'{e} minibands of twistronic graphene, one related to direct hybridization of Dirac states, and the other resulting from band folding caused by moir\'{e} superlattice. The positions of both peaks strongly depend on the twist angle, so that their detection can be used for non-invasive characterization of the twist, even in hBN-encapsulated structures.Comment: 7 pages (including 4 figures) + 10 pages (3 figures) supplemen

Estimating Photometric Redshifts for X-ray sources in the X-ATLAS field, using machine-learning techniques

We present photometric redshifts for 1,031 X-ray sources in the X-ATLAS field, using the machine learning technique TPZ (Carrasco Kind & Brunner 2013). X-ATLAS covers 7.1 deg2 observed with the XMM-Newton within the Science Demonstration Phase (SDP) of the H-ATLAS field, making it one of the largest contiguous areas of the sky with both XMMNewton and Herschel coverage. All of the sources have available SDSS photometry while 810 have additionally mid-IR and/or near-IR photometry. A spectroscopic sample of 5,157 sources primarily in the XMM/XXL field, but also from several X-ray surveys and the SDSS DR13 redshift catalogue, is used for the training of the algorithm. Our analysis reveals that the algorithm performs best when the sources are split, based on their optical morphology, into point-like and extended sources. Optical photometry alone is not enough for the estimation of accurate photometric redshifts, but the results greatly improve when, at least, mid-IR photometry is added in the training process. In particular, our measurements show that the estimated photometric redshifts for the X-ray sources of the training sample, have a normalized absolute median deviation, n_mad=0.06, and the percentage of outliers, eta=10-14 percent, depending on whether the sources are extended or point-like. Our final catalogue contains photometric redshifts for 933 out of the 1,031 X-ray sources with a median redshift of 0.9.Comment: 10 pages, 13 figures, A&A accepte