Results from homology search of microRNA candidates from maqui (<i>A</i>. <i>chilensis</i>) against the microRNA database.

<p>Results from homology search of microRNA candidates from maqui (<i>A</i>. <i>chilensis</i>) against the microRNA database.</p

Number of maqui (<i>A</i>. <i>chilensis</i>) 454 sequences before and after assembly.

<p>Number of maqui (<i>A</i>. <i>chilensis</i>) 454 sequences before and after assembly.</p

Summary of the frequency of SSRs from maqui (<i>A</i>. <i>chilensis</i>) with different numbers of tandem repeats.

<p>Summary of the frequency of SSRs from maqui (<i>A</i>. <i>chilensis</i>) with different numbers of tandem repeats.</p

Sampling of maqui (<i>A</i>. <i>chilensis</i>) in Chile.

<p>Samples of maqui were collected from Santiago (33°25'0"S 70°39'0"W) to Los Lagos (40°34'57.41”S 73°43'55.80”W) of Chile. A is an aerial map of Chile. B is an enlargement of the sampled area, and C corresponds to sampling at the Río Los Cipreses National Reserve (O’Higgins Region, Chile). The original pictures were taken from USGS The National Map, <a href="http://viewer.nationalmap.gov/" target="_blank">http://viewer.nationalmap.gov/</a> (Coordinates of sampling are described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0159825#pone.0159825.s001" target="_blank">S1 Table</a>).</p

Results of microsatellite (SSRs) search from maqui (<i>A</i>. <i>chilensis</i>) using MIcroSAtellite identification tool.

<p>Results of microsatellite (SSRs) search from maqui (<i>A</i>. <i>chilensis</i>) using MIcroSAtellite identification tool.</p

Characterization of SSR markers on 40 maqui (<i>A</i>. <i>chilensis</i>) genotypes from Chile.

<p>Characterization of SSR markers on 40 maqui (<i>A</i>. <i>chilensis</i>) genotypes from Chile.</p

Distribution of SSR from maqui (<i>A</i>. <i>chilensis</i>) with Di- to Octa-nucleotides by repeat numbers.

<p>The graph is based on a total of 15950 SSRs detected in non-redundant genomic maqui DNA. Di, tri, tetra, penta, hexa, hepta and octa refer to dinucleotides, trinucleotides, tetranucleotides, pentanucletides, hexanucleotides, heptanucleotides and octanucleotides, respectively.</p

Characterization of SSRs in genomic sequences of maqui (<i>A</i>. <i>chilensis</i>) generated by 454 sequencing.

<p>Characterization of SSRs in genomic sequences of maqui (<i>A</i>. <i>chilensis</i>) generated by 454 sequencing.</p

Gene Ontology classification of the predicted maqui (<i>A</i>. <i>chilensis</i>) ORFs.

<p>The classification was predicted according to molecular function (A) and biological process (B) using BLAST2GO with an E-6 cutoff.</p

Frequency distribution of SSR loci of maqui (<i>A</i>. <i>chilensis</i>) by motif length.

<p>The graph is based on a total of 15950 SSR markers detected in non-redundant genomic maqui DNA. Di, tri, tetra, penta, hexa, hepta and octa refer to dinucleotides, trinucleotides, tetranucleotides, pentanucleotides, hexanucleotides, heptanucleotides and octanucleotides, respectively.</p