Grain-size controls on the morphology and internal geometry of river-dominated deltas

Predictions of a delta's morphology, facies, and stratigraphy are typically derived from its relative wave, tide, and river energies, with sediment type playing a lesser role. Here we test the hypothesis that, all other factors being equal, the topset of a relatively noncohesive, sandy delta will have more active distributaries, a less rugose shoreline morphology, less topographic variation in its topset, and less variability in foreset dip directions than a highly cohesive, muddy delta. As a consequence its stratigraphy will have greater clinoform dip magnitudes and clinoform concavity, a greater percentage of channel facies, and less rugose sand bodies than a highly cohesive, muddy delta. Nine self-formed deltas having different sediment grain sizes and critical shear stresses required for re-entrainment of mud are simulated using Deflt3D, a 2D flow and sediment-transport model. Model results indicate that sand-dominated deltas are more fan-shaped while mud-dominated deltas are more birdsfoot in planform, because the sand-dominated deltas have more active distributaries and a smaller variance of topset elevations, and thereby experience a more equitable distribution of sediment to their perimeters. This results in a larger proportion of channel facies in sand-dominated deltas, and more uniformly distributed clinoform dip directions, steeper dips, and greater clinoform concavity. These conclusions are consistent with data collected from the Goose River Delta, a coarse-grained fan delta prograding into Goose Bay, Labrador, Canada. A reinterpretation of the Kf-1 parasequence set of the Cretaceous Last Chance Delta, a unit of the Ferron Sandstone near Emery, Utah, USA uses Ferron grain-size data, clinoform-dip data, clinoform concavity, and variance of dip directions to hindcast the delta's planform. The Kf-1 Last Chance Delta is predicted to have been more like a fan delta in planform than a birdsfoot delta

Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih

Seven mycobacteriophages from distinct geographical locations were isolated, using Mycobacterium smegmatis mc2155 as the host, and then purified and sequenced. All of the genomes are related to cluster A mycobacteriophages, BobSwaget and Lokk in subcluster A2; Fred313, KADY, Stagni, and StepMih in subcluster A3; and MyraDee in subcluster A18, the first phage to be assigned to that subcluster

Insects : taking a deeper look at the world of bugs

The Rural Science Education Program is a partnership between Oregon State University and local rural K–12 schools for enrichment of the science curriculum with hands on science activities. The curricula include simple, innovative inquiry- and site-based experiments that encourage critical thinking in K–12 students about the impacts of agriculture on the environment and the implications of advanced scientific research on human lives.- Build Your Own Insect Trap (Grades 3–6, one 50-minute period) - Ant Lions (Grades 3–8, two 50-minute periods) - Insect Pitfall Traps (Grades 3–8, four 50-minute periods)Published August 2005. Reviewed July 2013. Facts and recommendations in this publication may no longer be valid. Please look for up-to-date information in the OSU Extension Catalog: http://extension.oregonstate.edu/catalo

Structural, Mechanistic, and Antigenic Characterization of the Human Astrovirus Capsid.

UnlabelledHuman astroviruses (HAstVs) are nonenveloped, positive-sense, single-stranded RNA viruses that are a leading cause of viral gastroenteritis. HAstV particles display T=3 icosahedral symmetry formed by 180 copies of the capsid protein (CP), which undergoes proteolytic maturation to generate infectious HAstV particles. Little is known about the molecular features that govern HAstV particle assembly, maturation, infectivity, and immunogenicity. Here we report the crystal structures of the two main structural domains of the HAstV CP: the core domain at 2.60-Å resolution and the spike domain at 0.95-Å resolution. Fitting of these structures into the previously determined 25-Å-resolution electron cryomicroscopy density maps of HAstV allowed us to characterize the molecular features on the surfaces of immature and mature T=3 HAstV particles. The highly electropositive inner surface of HAstV supports a model in which interaction of the HAstV CP core with viral RNA is a driving force in T=3 HAstV particle formation. Additionally, mapping of conserved residues onto the HAstV CP core and spike domains in the context of the immature and mature HAstV particles revealed dramatic changes to the exposure of conserved residues during virus maturation. Indeed, we show that antibodies raised against mature HAstV have reactivity to both the HAstV CP core and spike domains, revealing for the first time that the CP core domain is antigenic. Together, these data provide new molecular insights into HAstV that have practical applications for the development of vaccines and antiviral therapies.ImportanceAstroviruses are a leading cause of viral diarrhea in young children, immunocompromised individuals, and the elderly. Despite the prevalence of astroviruses, little is known at the molecular level about how the astrovirus particle assembles and is converted into an infectious, mature virus. In this paper, we describe the high-resolution structures of the two main astrovirus capsid proteins. Fitting these structures into previously determined low-resolution maps of astrovirus allowed us to characterize the molecular surfaces of immature and mature astroviruses. Our studies provide the first evidence that astroviruses undergo viral RNA-dependent assembly. We also provide new insight into the molecular mechanisms that lead to astrovirus maturation and infectivity. Finally, we show that both capsid proteins contribute to the adaptive immune response against astrovirus. Together, these studies will help to guide the development of vaccines and antiviral drugs targeting astrovirus