1,017 research outputs found
Unsupervised Body Part Regression via Spatially Self-ordering Convolutional Neural Networks
Automatic body part recognition for CT slices can benefit various medical
image applications. Recent deep learning methods demonstrate promising
performance, with the requirement of large amounts of labeled images for
training. The intrinsic structural or superior-inferior slice ordering
information in CT volumes is not fully exploited. In this paper, we propose a
convolutional neural network (CNN) based Unsupervised Body part Regression
(UBR) algorithm to address this problem. A novel unsupervised learning method
and two inter-sample CNN loss functions are presented. Distinct from previous
work, UBR builds a coordinate system for the human body and outputs a
continuous score for each axial slice, representing the normalized position of
the body part in the slice. The training process of UBR resembles a
self-organization process: slice scores are learned from inter-slice
relationships. The training samples are unlabeled CT volumes that are abundant,
thus no extra annotation effort is needed. UBR is simple, fast, and accurate.
Quantitative and qualitative experiments validate its effectiveness. In
addition, we show two applications of UBR in network initialization and anomaly
detection.Comment: Oral presentation in ISBI1
Medical Image Data and Datasets in the Era of Machine Learning-Whitepaper from the 2016 C-MIMI Meeting Dataset Session.
At the first annual Conference on Machine Intelligence in Medical Imaging (C-MIMI), held in September 2016, a conference session on medical image data and datasets for machine learning identified multiple issues. The common theme from attendees was that everyone participating in medical image evaluation with machine learning is data starved. There is an urgent need to find better ways to collect, annotate, and reuse medical imaging data. Unique domain issues with medical image datasets require further study, development, and dissemination of best practices and standards, and a coordinated effort among medical imaging domain experts, medical imaging informaticists, government and industry data scientists, and interested commercial, academic, and government entities. High-level attributes of reusable medical image datasets suitable to train, test, validate, verify, and regulate ML products should be better described. NIH and other government agencies should promote and, where applicable, enforce, access to medical image datasets. We should improve communication among medical imaging domain experts, medical imaging informaticists, academic clinical and basic science researchers, government and industry data scientists, and interested commercial entities
Osteoporotic and Neoplastic Compression Fracture Classification on Longitudinal CT
Classification of vertebral compression fractures (VCF) having osteoporotic
or neoplastic origin is fundamental to the planning of treatment. We developed
a fracture classification system by acquiring quantitative morphologic and bone
density determinants of fracture progression through the use of automated
measurements from longitudinal studies. A total of 250 CT studies were acquired
for the task, each having previously identified VCFs with osteoporosis or
neoplasm. Thirty-six features or each identified VCF were computed and
classified using a committee of support vector machines. Ten-fold cross
validation on 695 identified fractured vertebrae showed classification
accuracies of 0.812, 0.665, and 0.820 for the measured, longitudinal, and
combined feature sets respectively.Comment: Contributed 4-Page Paper to be presented at the 2016 IEEE
International Symposium on Biomedical Imaging (ISBI), April 13-16, 2016,
Prague, Czech Republi
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