La Charente

15 mars 18961896/03/15 (A25,N10919)-1896/03/15.Appartient à l’ensemble documentaire : PoitouCh

Additional file 12: Figures S10-S11. of Reconstructing cancer karyotypes from short read data: the half empty and half full glass

Results on real samples LUAD 6, LUSC 5. (DOCX 314 kb

Additional file 5: Figure S3-S8. of Reconstructing cancer karyotypes from short read data: the half empty and half full glass

Results of different simulated scenarios. (DOCX 33 kb

Additional file 6: Table S3. of Reconstructing cancer karyotypes from short read data: the half empty and half full glass

Operations frequencies used in the default scenario and in the alternative scenario. (DOCX 18 kb

Additional file 2: Figure S2. of Reconstructing cancer karyotypes from short read data: the half empty and half full glass

Edges affected by removing a bridge. (DOCX 66 kb

Additional file 1: Figure S1. of Reconstructing cancer karyotypes from short read data: the half empty and half full glass

An example of graphs that represent equivalent yet not identical solutions. (DOCX 60 kb

Legislative Documents

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A summary of the SlimPLS variants and their properties.

<p>In all variants the total number of features selected was set to 50 unless otherwise specified. n is a natural number and p is a real number 0</p

KEGG pathway enrichment analysis.

<p>The modules found by DiffCoEx and DICER were tested for KEGG pathway enrichment using the hypergeometric test with 0.05 FDR correction. Neither method reported significant enrichment on the IBD data set. (A) The number of enriched pathways. (B) Average enrichment factors of the enriched sets. The enrichment factor is the ratio between the fraction of the pathway genes in the tested set and the fraction of the pathway genes in the data set.</p

Examples of generated motifs.

<p>The figure shows examples of the motifs produced by each method and the corresponding JASPAR motif. For three proteins, the PWM logos produced by each method and the experimentally and independently established motif in the JASPAR database are shown. AM was trained on motif length 8, while for BE, RM and SW only the most informative contiguous positions were kept. We chose TFs whose motifs had information content most similar to the averages of the different methods.</p