Transposable element distribution, abundance and role in genome size variation in the genus -6

<p><b>Copyright information:</b></p><p>Taken from "Transposable element distribution, abundance and role in genome size variation in the genus "</p><p>http://www.biomedcentral.com/1471-2148/7/152</p><p>BMC Evolutionary Biology 2007;7():152-152.</p><p>Published online 29 Aug 2007</p><p>PMCID:PMC2041954.</p><p></p>(2006) [9] and normalized to 1 Mbp. The confidence intervals, displayed as error bars, were calculated assuming a Poisson distribution of repeats in the genome. The mean length used in calculation for different repeats were as follows: Ty3-elements: 12 Kbp; Ty1-elements: 5.5 Kbp; others LTR-RTs not classified (LTR-retrotransposons): 8.75 Kbp; LINEs: 3.5 kbp; helitrons (complete autonomous): 12.8 Kbp; CACTA: 15.2 Kbp; hAT: 3.6 Kbp *In this case all the calculations are based on a rough estimate of the genome size of this species: the real value is unknown, we therefore used the value estimated for [HHJJ; 1283 Mbp], which is also an allotetraploid species and shares the HH genome type with

Transposable element distribution, abundance and role in genome size variation in the genus -1

<p><b>Copyright information:</b></p><p>Taken from "Transposable element distribution, abundance and role in genome size variation in the genus "</p><p>http://www.biomedcentral.com/1471-2148/7/152</p><p>BMC Evolutionary Biology 2007;7():152-152.</p><p>Published online 29 Aug 2007</p><p>PMCID:PMC2041954.</p><p></p>netic tree using the neighbor-joining method. Bootstrap values were calculated for 1000 replicates; only those with values greater than 50 are proposed B) distribution of the domains isolated in different species. Bar colors are the same of those used in the circles marking, on the neighbor-joining tree sequences from different species

Transposable element distribution, abundance and role in genome size variation in the genus -2

<p><b>Copyright information:</b></p><p>Taken from "Transposable element distribution, abundance and role in genome size variation in the genus "</p><p>http://www.biomedcentral.com/1471-2148/7/152</p><p>BMC Evolutionary Biology 2007;7():152-152.</p><p>Published online 29 Aug 2007</p><p>PMCID:PMC2041954.</p><p></p>netic tree using the neighbor-joining method. Bootstrap values were calculated for 1000 replicates; only those with values greater than 50 are proposed B) distribution of the domains isolated in different species. Bar colors are the same of those used in the circles marking, on the neighbor-joining tree sequences from different species

Transposable element distribution, abundance and role in genome size variation in the genus -5

<p><b>Copyright information:</b></p><p>Taken from "Transposable element distribution, abundance and role in genome size variation in the genus "</p><p>http://www.biomedcentral.com/1471-2148/7/152</p><p>BMC Evolutionary Biology 2007;7():152-152.</p><p>Published online 29 Aug 2007</p><p>PMCID:PMC2041954.</p><p></p>e using the neighbor-joining method. Bootstrap values were calculated for 1000 replicates; only those with values greater than 50 are proposed B) distribution of the domains isolated in different species. Bar colors are the same of those used in the circles marking, on the neighbor-joining tree sequences from different species

SyMAP view of unedited physical maps of chromosome 1 from eight diploid species aligned to the ssp

chromosome 1 RefSeq. The numbers in the small rectangles on the left are contig numbers of OMAP phase I physical maps. Beige bars on the right represent the RefSeq (IRGSP V.4 assembly) and the red crosses on the beige bars represent the CentO position of [18]. Purple lines represent BESs aligned to the RefSeq. The order of the species from the left to right is; [AA], [AA], [AA], [BB]; [CC], [EE]; [FF], [GG].<p><b>Copyright information:</b></p><p>Taken from "Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus "</p><p>http://genomebiology.com/2008/9/2/R45</p><p>Genome Biology 2008;9(2):R45-R45.</p><p>Published online 28 Feb 2008</p><p>PMCID:PMC2374706.</p><p></p