Hydrogen bond rearrangements and the motion of charge defects in water viewed using multidimensional ultrafast infrared spectroscopy

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Chemistry, February 2010."December 2009." Cataloged from PDF version of thesis. Vita.Includes bibliographical references.Compared with other molecular liquids, water is highly structured due to its ability to form up to four hydrogen bonds to its nearest neighbors, resulting in a tetrahedral network of molecules. However, this network is highly dynamic, exhibiting fluctuations and rearrangements that take place on femtosecond to picosecond time scales. The transport of excess protons and proton holes in water makes exclusive use of water's hydrogen bonding network. Compared to ions of similar size and charge density, both hydronium and hydroxide ions exhibit anomalously high diffusion rates due to the fact that water molecules that neighbor these ions can undergo a proton transfer reaction with the ion. This allows the structural diffusion of the ion to occur apart from the displacement of individual water molecules. In this thesis we adopt a joint experimental and theoretical approach to characterize the fluctuations of water's hydrogen bonding network and how these fluctuations act to drive the structural diffusion of the aqueous hydroxide ion. The experimental data that we present consists of a series of ultrafast nonlinear infrared spectroscopies, in particular two-dimensional infrared spectroscopy (2D IR), applied to the O-H stretching transition of a dilute solution of HOD in NaOD/D20. The frequency of the O-H stretch, (OH, is highly sensitive to the configuration of its hydrogen bonding partner. 2D IR spectroscopy allows us to measure rapid shifts in OH that reveal time scales for changes in the local environment of the HOD molecule.(cont.) The calculation of 2D IR spectra from molecular dynamics simulations then allows us to make a direct connection between the results of our experiments and the underlying dynamics of the system that drive both hydrogen bond exchange and the structural diffusion of the hydroxide ion. 2D IR spectra recorded for dilute HOD in D20 show a strong asymmetry, preferentially broadening in the frequency region indicative of strained or broken hydrogen bonds, indicating that these configurations are unstable and quickly return to a hydrogen bond. The time scale over which the 2D spectra broaden, ~60 fs, is similar to the librational period of water and suggests that molecules exchange hydrogen bonding partners though rapid, large amplitude rotations. Molecular dynamics simulations find that the transition state for hydrogen bond exchange resembles a bifurcated hydrogen bond. In roughly half of the examined exchange events, a second solvation shell water molecule inserts across the breaking hydrogen bond. This suggests that hydrogen bond rearrangements are tied to the restructuring of a water molecule's solvation shell. Upon the addition of NaOD to HOD/D20 solution, a large absorption continuum appears to the low frequency side of the O-H stretch due to the formation of strong hydrogen bonds between HOD molecules and OD ions. At early waiting times, 2D IR spectra show large, offdiagonal intensity in this frequency range that rapidly relaxes within ~110 fs.(cont.) Modeling using an empirical valence bond simulation (MS-EVB) model of aqueous NaOH suggests that as the 0-H stretching potential symmetrizes during proton transfer events, overtone transitions of the shared proton contribute strongly to 2D spectra. The rapid loss of offdiagonal intensity results from the spectral sweeping of these vibrational overtones as the solvent modulates the motion of the shared proton. The collective electric field of the solvent is found to be an appropriate reaction coordinate for the formation and modulation of shared proton states. Over picosecond waiting times, spectral features appear in the 2D IR spectra that are indicative of the exchange of population between OH~ ions and HOD molecules due to proton transfer. The construction of a spectral fitting model gives a lower bound of 3 ps for this exchange. Calculations of structural parameters following proton exchange using the MS-EVB simulation model suggest that the observed exchange process corresponds to the formation and breakage of hydrogen bonds donated by the HOD/OD~ pair formed as a result of the proton transfer. A full description of the structural diffusion of the hydroxide ion requires both a description of the local hydrogen bonding structure of the ion as well as the dielectric fluctuations of the surrounding solvent.by Sean T. Roberts.Ph.D

An extreme critical space-time: echoing and black-hole perturbations

A homothetic, static, spherically symmetric solution to the massless Einstein- Klein-Gordon equations is described. There is a curvature singularity which is central, null, bifurcate and marginally trapped. The space-time is therefore extreme in the sense of lying at the threshold between black holes and naked singularities, just avoiding both. A linear perturbation analysis reveals two types of dominant mode. One breaks the continuous self-similarity by periodic terms reminiscent of discrete self-similarity, with echoing period within a few percent of the value observed numerically in near-critical gravitational collapse. The other dominant mode explicitly produces a black hole, white hole, eternally naked singularity or regular dispersal, the latter indicating that the background is critical. The black hole is not static but has constant area, the corresponding mass being linear in the perturbation amplitudes, explicitly determining a unit critical exponent. It is argued that a central null singularity may be a feature of critical gravitational collapse.Comment: 6 revtex pages, 6 eps figure

Thermal Evolution of Mercury as Constrained by MESSENGER Observations

Orbital observations of Mercury by the MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) spacecraft provide new constraints on that planet's thermal and interior evolution. Specifically, MESSENGER observations have constrained the rate of radiogenic heat production via measurement of uranium, thorium, and potassium at the surface, and identified a range of surface compositions consistent with high-temperature, high-degree partial melts of the mantle. Additionally, MESSENGER data have placed new limits on the spatial and temporal variation in volcanic and tectonic activity and enabled determination that the planet's core is larger than previously estimated. Because Mercury's mantle layer is also thinner than previously thought, this result gives greater likelihood to the possibility that mantle convection is marginally supercritical or even that the mantle is not convecting. We simulate mantle convection and magma generation within Mercury's mantle under two-dimensional axisymmetry and a broad range of conditions to understand the implications of MESSENGER observations for the thermal evolution of the planet. These models demonstrate that mantle convection can persist in such a thin mantle for a substantial portion of Mercury's history, and often to the present, as long as the mantle is thicker than ~300 km. We also find that magma generation in Mercury's convecting mantle is capable of producing widespread magmas by large-degree partial melting, consistent with MESSENGER observations of the planet's surface chemistry and geology

Efficient Photon Upconversion Enabled by Strong Coupling Between Organic Molecules and Quantum Dots

Hybrid structures formed between organic molecules and inorganic quantum dots can accomplish unique photophysical transformations by taking advantage of their disparate properties. The electronic coupling between these materials is typically weak, leading photoexcited charge carriers to spatially localize to a dot or a molecule at its surface. However, we show that by converting a chemical linker that covalently binds anthracene molecules to silicon quantum dots from a carbon-carbon single bond to a double bond, we access a strong-coupling regime where excited carriers spatially delocalize across both anthracene and silicon. By pushing the system to delocalize, we design a photon upconversion system with a higher efficiency (17.2%) and lower threshold intensity (0.5 W/cm^2) than that of a corresponding weakly-coupled system. Our results show that strong coupling between molecules and nanostructures achieved through targeted linking chemistry provides a new route for tailoring properties in materials for light-driven applications.Comment: 33 pages (20 in main text, 13 in supporting information), 12 figures (5 in main text, 7 in supporting information

Singlet and Triplet Excitation Management in a Bichromophoric Near-Infrared-Phosphorescent BODIPY-Benzoporphyrin Platinum Complex

Multichromophoric arrays provide one strategy for assembling molecules with intense absorptions across the visible spectrum but are generally focused on systems that efficiently produce and manipulate singlet excitations and therefore are burdened by the restrictions of (a) unidirectional energy transfer and (b) limited tunability of the lowest molecular excited state. In contrast, we present here a multichromophoric array based on four boron dipyrrins (BODIPY) bound to a platinum benzoporphyrin scaffold that exhibits intense panchromatic absorption and efficiently generates triplets. The spectral complementarity of the BODIPY and porphryin units allows the direct observation of fast bidirectional singlet and triplet energy transfer processes (k_(ST)(^1BDP→^1Por) = 7.8 × 10^(11) s^(−1), k_(TT)(^3Por→^3BDP) = 1.0 × 10^(10) s^(−1), k_(TT)(^3BDP→^3Por) = 1.6 × 10^(10) s^(−1)), leading to a long-lived equilibrated [^3BDP][Por]⇔[BDP][^3Por] state. This equilibrated state contains approximately isoenergetic porphyrin and BODIPY triplets and exhibits efficient near-infrared phosphorescence (λ_(em) = 772 nm, Φ = 0.26). Taken together, these studies show that appropriately designed triplet-utilizing arrays may overcome fundamental limitations typically associated with core−shell chromophores by tunable redistribution of energy from the core back onto the antennae

Individual common variants exert weak effects on the risk for autism spectrum disorders.

While it is apparent that rare variation can play an important role in the genetic architecture of autism spectrum disorders (ASDs), the contribution of common variation to the risk of developing ASD is less clear. To produce a more comprehensive picture, we report Stage 2 of the Autism Genome Project genome-wide association study, adding 1301 ASD families and bringing the total to 2705 families analysed (Stages 1 and 2). In addition to evaluating the association of individual single nucleotide polymorphisms (SNPs), we also sought evidence that common variants, en masse, might affect the risk. Despite genotyping over a million SNPs covering the genome, no single SNP shows significant association with ASD or selected phenotypes at a genome-wide level. The SNP that achieves the smallest P-value from secondary analyses is rs1718101. It falls in CNTNAP2, a gene previously implicated in susceptibility for ASD. This SNP also shows modest association with age of word/phrase acquisition in ASD subjects, of interest because features of language development are also associated with other variation in CNTNAP2. In contrast, allele scores derived from the transmission of common alleles to Stage 1 cases significantly predict case status in the independent Stage 2 sample. Despite being significant, the variance explained by these allele scores was small (Vm< 1%). Based on results from individual SNPs and their en masse effect on risk, as inferred from the allele score results, it is reasonable to conclude that common variants affect the risk for ASD but their individual effects are modest

Utility of pharmacogenetic testing to optimise antidepressant pharmacotherapy in youth: a narrative literature review

Pharmacogenetics (PGx) is the study and application of how interindividual differences in our genomes can influence drug responses. By evaluating individuals’ genetic variability in genes related to drug metabolism, PGx testing has the capabilities to individualise primary care and build a safer drug prescription model than the current “one-size-fits-all” approach. In particular, the use of PGx testing in psychiatry has shown promising evidence in improving drug efficacy as well as reducing toxicity and adverse drug reactions. Despite randomised controlled trials demonstrating an evidence base for its use, there are still numerous barriers impeding its implementation. This review paper will discuss the management of mental health conditions with PGx-guided treatment with a strong focus on youth mental illness. PGx testing in clinical practice, the concerns for its implementation in youth psychiatry, and some of the barriers inhibiting its integration in clinical healthcare will also be discussed. Overall, this paper provides a comprehensive review of the current state of knowledge and application for PGx in psychiatry and summarises the capabilities of genetic information to personalising medicine for the treatment of mental ill-health in youth