Quasispecies evolution in general mean-field landscapes

I consider a class of fitness landscapes, in which the fitness is a function of a finite number of phenotypic "traits", which are themselves linear functions of the genotype. I show that the stationary trait distribution in such a landscape can be explicitly evaluated in a suitably defined "thermodynamic limit", which is a combination of infinite-genome and strong selection limits. These considerations can be applied in particular to identify relevant features of the evolution of promoter binding sites, in spite of the shortness of the corresponding sequences.Comment: 6 pages, 2 figures, Europhysics Letters style (included) Finite-size scaling analysis sketched. To appear in Europhysics Letter

Early surgery versus initial conservative treatment in patients with traumatic intracerebral haemorrhage [STITCH(Trauma)] : the first randomized trial

Acknowledgements This project was funded by the NIHR Health Technology Assessment programme (project number 07/37/16). The views and opinions expressed therein are those of the authors and do not necessarily reflect those of the HTA programme, NIHR, NHS or the Department of Health.Peer reviewedPublisher PD

Silviculture and the red-cockaded woodpecker: Where do we go from here?

Recent standards and guidelines for the protection and management of red-cockaded woodpecker habitat within 3/4 mi of colony sites, and also thinning within colonies to reduce basal area and midstory will have a significant effect on National Forest lands. The relation of these thinnings to forest pest management will be examined as well as the area of forest involved. Current fire regulations in relation to prescribed burns and potential fuel buildup will be examined. Plans for research, including disturbances, hazard, and risk rating for southern pine beetle and landscape changes will be presented

Interferon-gamma deficiency prevents coronary arteriosclerosis but not myocardial rejection in transplanted mouse hearts

We have hypothesized that T cell cytokines participate in the pathogenesis of graft arterial disease (GAD). This study tested the consequences of IFN-gamma deficiency on arterial and parenchymal pathology in murine cardiac allografts. Hearts from C-H-2(bm12)KhEg (bm12, H-2(bm12)) were transplanted into C57/B6 (B6, H-2(b)), wild-type, or B6 IFN-gamma-deficient (GKO) recipients after immunosuppression by treatment with anti-CD4 and anti-CD8 mAbs. In wild-type recipients, myocardial rejection peaked at 4 wk, (grade 2. 1+/-0.3 out of 4, mean+/-SEM, n = 9), and by 8-12 wk evolved coronary arteriopathy. At 12 wk, the GAD score was 1.4+/-0.3, and the parenchymal rejection grade was 1.2+/-0.3 (n = 8). In GKO recipients of bm12 allografts, myocardial rejection persisted at 12 wk (grade 2.5+/-0.3, n = 6), but no GAD developed (score: 0.0+/-0.0, n = 6, P < 0.01 vs. wild-type). Mice treated with anti-IFN-gamma mAbs showed similar results. Isografts generally showed no arterial changes. In wild-type recipients, arterial and parenchymal cells showed increased MHC class II molecules, intercellular adhesion molecule-1, and vascular cell adhesion molecule-1 compared to normal or isografted hearts. The allografts in GKO recipients showed attenuated expression of these molecules (n = 6). Thus, development of GAD, but not parenchymal rejection, requires IFN-gamma. Reduced expression of MHC antigens and leukocyte adhesion molecules may contribute to the lack of coronary arteriopathy in hearts allografted into GKO mice

1980s–2010s: the world’s largest mangrove ecosystem is becoming homogenous

Knowledge gaps in spatiotemporal changes in mangrove diversity and composition have obstructed mangrove conservation programs across the tropics, but particularly in the Sundarbans (10,017 km2), the world's largest remaining natural mangrove ecosystem. Using mangrove tree data collected from Earth's largest permanent sample plot network at four historical time points (1986, 1994, 1999 and 2014), this study establishes spatially explicit baseline biodiversity information for the Sundarbans. We determined the spatial and temporal differences in alpha, beta, and gamma diversity in three ecological zones (hypo-, meso-, and hypersaline) and also uncovered changes in the mangroves' overall geographic range and abundances therein. Spatially, the hyposaline mangrove communities were the most diverse and heterogeneous in species composition while the hypersaline communities were the least diverse and most homogeneous at all historical time points. Since 1986, we detect an increasing trend of compositional homogeneity (between-site similarity in species composition) and a significant spatial contraction of distinct and diverse areas over the entire ecosystem. Temporally, the western and southern hypersaline communities have undergone radical shifts in species composition due to population increase and range expansion of the native invasive species Ceriops decandra and local extinction or range contraction of specialists including the globally endangered Heritiera fomes. The surviving biodiversity hotspots are distributed outside the legislated protected area network. In addition to suggesting the immediate coverage of these hotspots under protected area management, our novel biodiversity insights and spatial maps can form the basis for spatial conservation planning, biodiversity monitoring and protection initiatives for the Sundarbans

Archaean multi-stage magmatic underplating drove formation of continental nuclei in the North China Craton

The geodynamic processes that formed Earth’s earliest continents are intensely debated. Particularly, the transformation from ancient crustal nuclei into mature Archaean cratons is unclear, primarily owing to the paucity of well-preserved Eoarchaean–Palaeoarchaean ‘protocrust’. Here, we report a newly identified Palaeoarchaean continental fragment—the Baishanhu nucleus—in northeastern North China Craton. U–Pb geochronology shows that this nucleus preserves five major magmatic events during 3.6–2.5 Ga. Geochemistry and zircon Lu–Hf isotopes reveal ancient 4.2–3.8 Ga mantle extraction ages, as well as later intraplate crustal reworking. Crustal architecture and zircon Hf–O isotopes indicate that proto-North China first formed in a stagnant/squishy lid geodynamic regime characterised by plume-related magmatic underplating. Such cratonic growth and maturation were prerequisites for the emergence of plate tectonics. Finally, these data suggest that North China was part of the Sclavia supercraton and that the Archaean onset of subduction occurred asynchronously worldwide