Tumor markers: a proteomic approach

This article reviews the recently published data on the diagnosis of cancer with proteomics, including the major proteomics technologies and promising strategies for biomarker discovery and development.  Most of the tumor markers are proteins that either numerically increase in response to the alteration of cancer conditions or are produced by cancer cells. However, they are natural compounds ordinarily available in the typical cells to a little extent what are affected by increase of expression due to cancer and its intensity in blood, body fluids or tissues. Tumor markers are substances normally available in body fluids such as serum, urine, blood, and tissues that increase in the desired tissue of cancer patients. Most of tumor markers are proteins that either are produced in response to changes in cancer conditions or are made by the cancer cells. However, most of tumor markers are among the natural compounds of normal cells present in normal conditions in the cell in small amounts and are affected by increase of expression, due to cancer and their levels in the blood, body fluids or tissues

Appraisal of fibroblast viability in different concentration of glucose as mimicry diabetic condition

Diabetes mellitus is a common name for a group of diseases of a much diversified etiopathogenesis, characterized by chronically increased concentration of blood glucose. Diabetes results from alterations of various genes, each having a partial and additive effect. The inheritance pattern is thus complex, and environmental factors play an important role in favoring or delaying the expression of the disease. Diabetes can cause devastating complications, including cardiovascular diseases, kidney failure, and blindness, leg and foot amputations, delay in wound healing, which often result in disability and death. Fibroblast cells play a critical role in wound healing. They are the most common cells of connective tissue in animals. Tissue damage stimulates fibrocystic and induces the mitosis of fibroblasts. Wound healing processes in diabetic patients are so longer and sometimes cause to cut damaged tissue. In this study Fibroblasts were isolated from foreskin and cultured as primary cell culture in different concentrations of glucose (8.8 mmol/l, 13.13 mmol/l, 18.31 mmol/l, 27.7 mmol/l, 37.18 mmol/l, 47.17 mmol/l, 83.24 mmol/l, 124.8 mmol/l and 166.4 mmol/l) for 48h incubation time. Traditionally, the determination of cell growth is done by counting viable cells after staining witha vital dye. Among several approaches have been used in the past, The MTT method of cell determination is most invaluable to cultures which are prepared in multiwall plates. This assay is a sensitive, quantitative and reliable colorimetric assay that measures viability, proliferation and activation of cells. The results of this preliminary study suggest that altered glucose concentrations may affect fibroblast behavior in ways that are important for tissue repair and wound healing. The cells had low level of confluency and viability and in high concentration fibroblast had very low cell division.

Structural Biology: Modeling applications and techniques at a glance

As recent advancements in biology shows, the molecular machines specially proteins, RNA and complex molecules play the main role of the so called cell functionality. It means a very big part of the system biology is concerned with the interactions of such molecular components. Drug industries and research institutes are trying hard to better understand the concepts underlying these interactions and are highly dependent on the issues regarding these molecular elements. However the costs for such projects are so high and in many cases these projects will be funded by governments or profit making companies. With this in mind it has to be said that the techniques like stimulation are always a very good candidate to decrease such costs and to provide scientists with a bright future of the project results before undergoing costly experiments. However the costs involved projects that determine an approximation for the problem is not that much high but they are also costly. So it is of utmost importance to invent special techniques for the concept of stimulation that can also decrease the project costs and also predict much accurately. Since the system biology and proteomics as the study of the proteins and their functions are in the center of consideration for the purpose of drug discovery, understanding the cell functionalities and the underlying causes behind diseases; so we need advance software and algorithms that can predict the structure of the molecular components and to provide researchers with the computational tools to analyze such models. In this paper we make review of the importance of molecular modeling, its limitations and applications

Impact of neonatal anoxia and hypothermic treatment on development and memory of rats

Therapeutic hypothermia (TH) is well established as a standard treatment for term and near-term infants. However, therapeutic effects of hypothermia following neonatal anoxia in very premature babies remains inconclusive. The present rodent model of preterm neonatal anoxia has been shown to alter developmental milestones and hippocampal neurogenesis, and to disrupt spatial learning and memory in adulthood. These effects seem to be reduced by post-insult hypothermia. Epigenetic-related mechanisms have been postulated as valuable tools for developing new therapies. Dentate gyrus neurogenesis is regulated by epigenetic factors. This study evaluated whether TH effects in a rodent model of preterm oxygen deprivation are based on epigenetic alterations. The effects of TH on both developmental features (somatic growth, maturation of physical characteristics and early neurological reflexes) and performance of behavioral tasks at adulthood (spatial reference and working memory, and fear conditioning) were investigated in association with the possible involvement of the epigenetic operator Enhancer of zeste homolog 2 (Ezh2), possibly related to long-lasting effects on hippocampal neurogenesis. Results showed that TH reduced both anoxia-induced hippocampal neurodegeneration and anoxiainduced impairments on risk assessment behavior, acquisition of spatial memory, and extinction of auditory and contextual fear conditioning. In contrast, TH did not prevent developmental alterations caused by neonatal anoxia and did not restore hippocampal neurogenesis or cause changes in EZH2 levels. In conclusion, despite the beneficial effects of TH in hippocampal neurodegeneration and in reversing disruption of performance of behavioral tasks following oxygen deprivation in prematurity, these effects seem not related to developmental alterations and hippocampal neurogenesis and, apparently, is not caused by Ezh2-mediated epigenetic alteration.Fil: Matsuda, Victor Daniel Vasquez. Universidade de Sao Paulo; BrasilFil: Bustelo Tejada, Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Houssay. Instituto de Biología Celular y Neurociencia "Prof. Eduardo de Robertis". Universidad de Buenos Aires. Facultad de Medicina. Instituto de Biología Celular y Neurociencia; Argentina. Universiteit Maastricht. Faculty of Health Medicine and Life Sciences; Países Bajos. Universidad Católica de Cuyo. Facultad de Ciencias Médicas. Instituto de Investigación en Ciencias Biomédicas; Argentina. Universidad Federal do Abc; BrasilFil: Motta Teixeira, Lívia Clemente. Universidade de Sao Paulo; BrasilFil: Ikebara, Juliane Midori. Universidad Federal do Abc; BrasilFil: Cardoso, Débora Sterzeck. Universidad Federal do Abc; BrasilFil: Machado Nils, Aline Vilar. Universidade de Sao Paulo; BrasilFil: Lee, Vitor Yonamine. Universidade de Sao Paulo; BrasilFil: Diccini, Isabelle. Universidade de Sao Paulo; BrasilFil: Arruda, Bruna Petrucelli. Universidade de Sao Paulo; Brasil. Universidad Federal do Abc; BrasilFil: Martins, Pamela Pinheiro. Universidad Federal do Abc; BrasilFil: Dias, Natália Myuki Morales. Universidad Federal do Abc; BrasilFil: Tessarotto, Rafaella Pinto. Universidad Federal do Abc; BrasilFil: Raeisossadati, Reza. Universidad Federal do Abc; BrasilFil: Bruno, Martin. Universidad Católica de Cuyo. Facultad de Ciencias Médicas. Instituto de Investigación en Ciencias Biomédicas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - San Juan; ArgentinaFil: Takase, Luiz Fernando. Universidade Federal do São Carlos; BrasilFil: Kihara, Alexandre Hiroaki. Universidad Federal do Abc; BrasilFil: Nogueira, Maria Inês. Universidade de Sao Paulo; BrasilFil: Xavier, Gilberto Fernando. Universidade de Sao Paulo; BrasilFil: Takada, Silvia Honda. Universidad Federal do Abc; Brasi