Modeling Adaptive Regulatory T-Cell Dynamics during Early HIV Infection

Regulatory T-cells (Tregs) are a subset of CD4+ T-cells that have been found to suppress the immune response. During HIV viral infection, Treg activity has been observed to have both beneficial and deleterious effects on patient recovery; however, the extent to which this is regulated is poorly understood. We hypothesize that this dichotomy in behavior is attributed to Treg dynamics changing over the course of infection through the proliferation of an ‘adaptive’ Treg population which targets HIV-specific immune responses. To investigate the role Tregs play in HIV infection, a delay differatial equation model was constructed to examine (1) the possible existence of two distinct Treg populations, normal (nTregs) and adaptive (aTregs), and (2) their respective effects in limiting viral load. Sensitivity analysis was performed to test parameter regimes that show the proportionality of viral load with adaptive regulatory populations and also gave insight into the importance of downregulation of CD4+ cells by normal Tregs on viral loads. Through the inclusion of Treg populations in the model, a diverse array of viral dynamics was found. Specifically, oscillatory and steady state behaviors were both witnessed and it was seen that the model provided a more accurate depiction of the effector cell population as compared with previous models. Through further studies of adaptive and normal Tregs, improved treatments for HIV can be constructed for patients and the viral mechanisms of infection can be further elucidated

A rigorous real time Feynman Path Integral and Propagator

We will derive a rigorous real time propagator for the Non-relativistic Quantum Mechanic $L^2$ transition probability amplitude and for the Non-relativistic wave function. The propagator will be explicitly given in terms of the time evolution operator. The derivation will be for all self-adjoint nonvector potential Hamiltonians. For systems with potential that carries at most a finite number of singularity and discontinuities, we will show that our propagator can be written in the form of a rigorous real time, time sliced Feynman path integral via improper Riemann integrals. We will also derive the Feynman path integral in Nonstandard Analysis Formulation. Finally, we will compute the propagator for the harmonic oscillator using the Nonstandard Analysis Feynman path integral formuluation; we will compute the propagator without using any knowledge of classical properties of the harmonic oscillator

First order phase transition of the vortex lattice in twinned YBa2Cu3O7 single crystals in tilted magnetic fields

We present an exhaustive analysis of transport measurements performed in twinned YBa2Cu3O7 single crystals which stablishes that the vortex solid-liquid transition is first order when the magnetic field H is applied at an angle theta away from the direction of the twin planes. We show that the resistive transitions are hysteretic and the V-I curves are non-linear, displaying a characteristic s-shape at the melting line Hm(T), which scales as epsilon(theta)Hm(T,theta). These features are gradually lost when the critical point H*(theta) is approached. Above H*(theta) the V-I characteristics show a linear response in the experimentally accessible V-I window, and the transition becomes reversible. Finally we show that the first order phase transition takes place between a highly correlated vortex liquid in the field direction and a solid state of unknown symmetry. As a consequence, the available data support the scenario for a vortex-line melting rather than a vortex sublimation as recently suggested [T.Sasagawa et al. PRL 80, 4297 (1998)].Comment: 10 pages, 8 figures, submitted to PR

Effective dynamics for particles coupled to a quantized scalar field

We consider a system of N non-relativistic spinless quantum particles (``electrons'') interacting with a quantized scalar Bose field (whose excitations we call ``photons''). We examine the case when the velocity v of the electrons is small with respect to the one of the photons, denoted by c (v/c= epsilon << 1). We show that dressed particle states exist (particles surrounded by ``virtual photons''), which, up to terms of order (v/c)^3, follow Hamiltonian dynamics. The effective N-particle Hamiltonian contains the kinetic energies of the particles and Coulomb-like pair potentials at order (v/c)^0 and the velocity dependent Darwin interaction and a mass renormalization at order (v/c)^{2}. Beyond that order the effective dynamics are expected to be dissipative. The main mathematical tool we use is adiabatic perturbation theory. However, in the present case there is no eigenvalue which is separated by a gap from the rest of the spectrum, but its role is taken by the bottom of the absolutely continuous spectrum, which is not an eigenvalue. Nevertheless we construct approximate dressed electrons subspaces, which are adiabatically invariant for the dynamics up to order (v/c)\sqrt{\ln (v/c)^{-1}}. We also give an explicit expression for the non adiabatic transitions corresponding to emission of free photons. For the radiated energy we obtain the quantum analogue of the Larmor formula of classical electrodynamics.Comment: 67 pages, 2 figures, version accepted for publication in Communications in Mathematical Physic

Asymptotic analysis for the generalized langevin equation

Various qualitative properties of solutions to the generalized Langevin equation (GLE) in a periodic or a confining potential are studied in this paper. We consider a class of quasi-Markovian GLEs, similar to the model that was introduced in \cite{EPR99}. Geometric ergodicity, a homogenization theorem (invariance principle), short time asymptotics and the white noise limit are studied. Our proofs are based on a careful analysis of a hypoelliptic operator which is the generator of an auxiliary Markov process. Systematic use of the recently developed theory of hypocoercivity \cite{Vil04HPI} is made.Comment: 27 pages, no figures. Submitted to Nonlinearity

Vortex Flow and Transverse Flux Screening at the Bose Glass Transition

We investigate the vortex phase diagram in untwinned YBaCuO single crystals with columnar defects. These randomly distributed defects, produced by heavy ion irradiation, are expected to induce a ``Bose Glass'' phase of localized vortices characterized by a vanishing resistance and a Meissner effect for magnetic fields transverse to the defect axis. We directly observe the transverse Meissner effect using an array of Hall probe magnetometers. As predicted, the Meissner state breaks down at temperatures Ts that decrease linearly with increasing transverse magnetic field. However, Ts falls well below the conventional melting temperature Tm determined by a vanishing resistivity, suggesting an intermediate regime where flux lines are effectively localized even when rotated off the columnar defects.Comment: 15 pages, 5 figure

Non-commutative Geometry and Kinetic Theory of Open Systems

The basic mathematical assumptions for autonomous linear kinetic equations for a classical system are formulated, leading to the conclusion that if they are differential equations on its phase space $M$, they are at most of the 2nd order. For open systems interacting with a bath at canonical equilibrium they have a particular form of an equation of a generalized Fokker-Planck type. We show that it is possible to obtain them as Liouville equations of Hamiltonian dynamics on $M$ with a particular non-commutative differential structure, provided certain geometric in character, conditions are fulfilled. To this end, symplectic geometry on $M$ is developped in this context, and an outline of the required tensor analysis and differential geometry is given. Certain questions for the possible mathematical interpretation of this structure are also discussed.Comment: 22 pages, LaTe

Anderson Localization, Non-linearity and Stable Genetic Diversity

In many models of genotypic evolution, the vector of genotype populations satisfies a system of linear ordinary differential equations. This system of equations models a competition between differential replication rates (fitness) and mutation. Mutation operates as a generalized diffusion process on genotype space. In the large time asymptotics, the replication term tends to produce a single dominant quasispecies, unless the mutation rate is too high, in which case the populations of different genotypes becomes de-localized. We introduce a more macroscopic picture of genotypic evolution wherein a random replication term in the linear model displays features analogous to Anderson localization. When coupled with non-linearities that limit the population of any given genotype, we obtain a model whose large time asymptotics display stable genotypic diversityComment: 25 pages, 8 Figure

Imprints of the Quantum World in Classical Mechanics

The imprints left by quantum mechanics in classical (Hamiltonian) mechanics are much more numerous than is usually believed. We show Using no physical hypotheses) that the Schroedinger equation for a nonrelativistic system of spinless particles is a classical equation which is equivalent to Hamilton's equations.Comment: Paper submitted to Foundations of Physic