Light bullets in quadratic media with normal dispersion at the second harmonic

Stable two- and three-dimensional spatiotemporal solitons (STSs) in second-harmonic-generating media are found in the case of normal dispersion at the second harmonic (SH). This result, surprising from the theoretical viewpoint, opens a way for experimental realization of STSs. An analytical estimate for the existence of STSs is derived, and full results, including a complete stability diagram, are obtained in a numerical form. STSs withstand not only the normal SH dispersion, but also finite walk-off between the harmonics, and readily self-trap from a Gaussian pulse launched at the fundamental frequency.Comment: 4 pages, 5 figures, accepted to Phys. Rev. Let

Parallel Batch-Dynamic Graph Connectivity

In this paper, we study batch parallel algorithms for the dynamic connectivity problem, a fundamental problem that has received considerable attention in the sequential setting. The most well known sequential algorithm for dynamic connectivity is the elegant level-set algorithm of Holm, de Lichtenberg and Thorup (HDT), which achieves $O(\log^2 n)$ amortized time per edge insertion or deletion, and $O(\log n / \log\log n)$ time per query. We design a parallel batch-dynamic connectivity algorithm that is work-efficient with respect to the HDT algorithm for small batch sizes, and is asymptotically faster when the average batch size is sufficiently large. Given a sequence of batched updates, where $\Delta$ is the average batch size of all deletions, our algorithm achieves $O(\log n \log(1 + n / \Delta))$ expected amortized work per edge insertion and deletion and $O(\log^3 n)$ depth w.h.p. Our algorithm answers a batch of $k$ connectivity queries in $O(k \log(1 + n/k))$ expected work and $O(\log n)$ depth w.h.p. To the best of our knowledge, our algorithm is the first parallel batch-dynamic algorithm for connectivity.Comment: This is the full version of the paper appearing in the ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), 201

Simulation of transition dynamics to high confinement in fusion plasmas

The transition dynamics from the low (L) to the high (H) confinement mode in magnetically confined plasmas is investigated using a first-principles four-field fluid model. Numerical results are in close agreement with measurements from the Experimental Advanced Superconducting Tokamak - EAST. Particularly, the slow transition with an intermediate dithering phase is well reproduced by the numerical solutions. Additionally, the model reproduces the experimentally determined L-H transition power threshold scaling that the ion power threshold increases with increasing particle density. The results hold promise for developing predictive models of the transition, essential for understanding and optimizing future fusion power reactors

Lengthscales and Cooperativity in DNA Bubble Formation

It appears that thermally activated DNA bubbles of different sizes play central roles in important genetic processes. Here we show that the probability for the formation of such bubbles is regulated by the number of soft AT pairs in specific regions with lengths which at physiological temperatures are of the order of (but not equal to) the size of the bubble. The analysis is based on the Peyrard- Bishop-Dauxois model, whose equilibrium statistical properties have been accurately calculated here with a transfer integral approach

Structurally specific thermal fluctuations identify functional sites for DNA transcription

We report results showing that thermally-induced openings of double stranded DNA coincide with the location of functionally relevant sites for transcription. Investigating both viral and bacterial DNA gene promoter segments, we found that the most probable opening occurs at the transcription start site. Minor openings appear to be related to other regulatory sites. Our results suggest that coherent thermal fluctuations play an important role in the initiation of transcription. Essential elements of the dynamics, in addition to sequence specificity, are nonlinearity and entropy, provided by local base-pair constraints

Khovanov homology is an unknot-detector

We prove that a knot is the unknot if and only if its reduced Khovanov cohomology has rank 1. The proof has two steps. We show first that there is a spectral sequence beginning with the reduced Khovanov cohomology and abutting to a knot homology defined using singular instantons. We then show that the latter homology is isomorphic to the instanton Floer homology of the sutured knot complement: an invariant that is already known to detect the unknot.Comment: 124 pages, 13 figure

Extreme events in discrete nonlinear lattices

We perform statistical analysis on discrete nonlinear waves generated though modulational instability in the context of the Salerno model that interpolates between the intergable Ablowitz-Ladik (AL) equation and the nonintegrable discrete nonlinear Schrodinger (DNLS) equation. We focus on extreme events in the form of discrete rogue or freak waves that may arise as a result of rapid coalescence of discrete breathers or other nonlinear interaction processes. We find power law dependence in the wave amplitude distribution accompanied by an enhanced probability for freak events close to the integrable limit of the equation. A characteristic peak in the extreme event probability appears that is attributed to the onset of interaction of the discrete solitons of the AL equation and the accompanied transition from the local to the global stochasticity monitored through the positive Lyapunov exponent of a nonlinear map.Comment: 5 pages, 4 figures; reference added, figure 2 correcte