Additional file 1: of MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions

Supplemental Figures (Figures S1-S6) and Tables (Tables S1 and S2). (DOCX 1785 kb

The MIAPA ontology: An annotation ontology for validating minimum metadata reporting for phylogenetic analyses

<p>Abstract for a Lightning Talk presented at the 2013 iEvoBio conference, which took place June 25-26, 2013, in Snowbird, UT. The presented slides are at http://www.slideshare.net/hlapp/miapa-i-evobio-2013.</p

Data_Sheet_1_The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.pdf

<p>Plant phenology – the timing of plant life-cycle events, such as flowering or leafing out – plays a fundamental role in the functioning of terrestrial ecosystems, including human agricultural systems. Because plant phenology is often linked with climatic variables, there is widespread interest in developing a deeper understanding of global plant phenology patterns and trends. Although phenology data from around the world are currently available, truly global analyses of plant phenology have so far been difficult because the organizations producing large-scale phenology data are using non-standardized terminologies and metrics during data collection and data processing. To address this problem, we have developed the Plant Phenology Ontology (PPO). The PPO provides the standardized vocabulary and semantic framework that is needed for large-scale integration of heterogeneous plant phenology data. Here, we describe the PPO, and we also report preliminary results of using the PPO and a new data processing pipeline to build a large dataset of phenology information from North America and Europe.</p

Publications.

Peer-reviewed research citing the use of resources from the iPlant Collaborative (2008–2017) and CyVerse (2017-Present). Also see https://cyverse.org/publications for the latest update. (PDF)</p

Demographics registered users’ research area (A), occupation (B), and genders (C).

Demographics registered users’ research area (A), occupation (B), and genders (C).</p

Version control.

Public and private version control organizations on GitHub and GitLab for CyVerse Software, Public Container Registry, and Education. (PDF)</p

University of Arizona hardware.

On-premises resources maintained by CyVerse at the University of Arizona. DE = Discovery Environment, VICE = Virtual Interactive Compute Environment. (PDF)</p

DE applications.

How they run, where they run, and popular applications. (PDF)</p

Workshop and webinar participants.

In-person and Virtual Workshops and total enrollees, Virtual Webinars given and participants who RSVP’d.</p

Description of CyVerse core & cloud services.

Additional details about CyVerse featured platforms, core services, and cloud native services. Basemaps from Carto and OpenStreetMap CC-BY 4.0 license, (https://github.com/CartoDB/basemap-styles). (PDF)</p