Scalable Node-Centric Route Mutation for Defense of Large-Scale Software-Defined Networks

© 2017 Yang Zhou et al. Exploiting software-defined networking techniques, randomly and instantly mutating routes can disguise strategically important infrastructure and protect the integrity of data networks. Route mutation has been to date formulated as NP-complete constraint satisfaction problem where feasible sets of routes need to be generated with exponential computational complexities, limiting algorithmic scalability to large-scale networks. In this paper, we propose a novel node-centric route mutation method which interprets route mutation as a signature matching problem. We formulate the route mutation problem as a three-dimensional earth mover's distance (EMD) model and solve it by using a binary branch and bound method. Considering the scalability, we further propose that a heuristic method yields significantly lower computational complexities with marginal loss of robustness against eavesdropping. Simulation results show that our proposed methods can effectively disguise key infrastructure by reducing the difference of historically accumulative traffic among different switches. With significantly reduced complexities, our algorithms are of particular interest to safeguard large-scale networks

Rate variation and estimation of divergence times using strict and relaxed clocks

Background Understanding causes of biological diversity may be greatly enhanced by knowledge of divergence times. Strict and relaxed clock models are used in Bayesian estimation of divergence times. We examined whether: i) strict clock models are generally more appropriate in shallow phylogenies where rate variation is expected to be low, ii) the likelihood ratio test of the clock (LRT) reliably informs which model is appropriate for dating divergence times. Strict and relaxed models were used to analyse sequences simulated under different levels of rate variation. Published shallow phylogenies (Black bass, Primate-sucking lice, Podarcis lizards, Gallotiinae lizards, and Caprinae mammals) were also analysed to determine natural levels of rate variation relative to the performance of the different models. Results Strict clock analyses performed well on data simulated under the independent rates model when the standard deviation of log rate on branches, σ, was low (≤0.1), but were inappropriate when σ>0.1 (95% of rates fall within 0.0082-0.0121 subs/site/Ma when σ = 0.1, for a mean rate of 0.01). The independent rates relaxed clock model performed well at all levels of rate variation, although posterior intervals on times were significantly wider than for the strict clock. The strict clock is therefore superior when rate variation is low. The performance of a correlated rates relaxed clock model was similar to the strict clock. Increased numbers of independent loci led to slightly narrower posteriors under the relaxed clock while older root ages provided proportionately narrower posteriors. The LRT had low power for σ = 0.01-0.1, but high power for σ = 0.5-2.0. Posterior means of σ2 were useful for assessing rate variation in published datasets. Estimates of natural levels of rate variation ranged from 0.05-3.38 for different partitions. Differences in divergence times between relaxed and strict clock analyses were greater in two datasets with higher σ2 for one or more partitions, supporting the simulation results. Conclusions The strict clock can be superior for trees with shallow roots because of low levels of rate variation between branches. The LRT allows robust assessment of suitability of the clock model as does examination of posteriors on σ2

Towards segmentation and spatial alignment of the human embryonic brain using deep learning for atlas-based registration

We propose an unsupervised deep learning method for atlas based registration to achieve segmentation and spatial alignment of the embryonic brain in a single framework. Our approach consists of two sequential networks with a specifically designed loss function to address the challenges in 3D first trimester ultrasound. The first part learns the affine transformation and the second part learns the voxelwise nonrigid deformation between the target image and the atlas. We trained this network end-to-end and validated it against a ground truth on synthetic datasets designed to resemble the challenges present in 3D first trimester ultrasound. The method was tested on a dataset of human embryonic ultrasound volumes acquired at 9 weeks gestational age, which showed alignment of the brain in some cases and gave insight in open challenges for the proposed method. We conclude that our method is a promising approach towards fully automated spatial alignment and segmentation of embryonic brains in 3D ultrasound

Decentralised control method for DC microgrids with improved current sharing accuracy

© The Institution of Engineering and Technology 2016. A decentralised control method that deals with current sharing issues in dc microgrids (MGs) is proposed in thisstudy. The proposed method is formulated in terms of 'modified global indicator' concept, which was originally proposedto improve reactive power sharing in ac MGs. In this work, the 'modified global indicator' concept is extended tocoordinate dc MGs, which aims to preserve the main features offered by decentralised control methods such as no need ofcommunication links, central controller or knowledge of the microgrid topology and parameters. This global indicator isinserted between current and voltage variables by adopting a virtual capacitor, which directly produces an output currentsharing performance that is less relied on mismatches of the multi-bus network. Meanwhile, a voltage stabiliser iscomplementary developed to maintain output voltage magnitude at steady state through a shunt virtual resistance. Theoperation under multiple dc-buses is also included in order to enhance the applicability of the proposed controller. Adetailed mathematical model including the effect of network mismatches is derived for analysis of the stability of theproposed controller. The feasibility and effectiveness of the proposed control strategy are validated by simulation andexperimental results

Exploration of a potent PI3 kinase/mTOR inhibitor as a novel anti-fibrotic agent in IPF

© 2016 BMJ Publishing Group Ltd & British Thoracic Society.Rationale Idiopathic pulmonary fibrosis (IPF) is the most rapidly progressive and fatal of all fibrotic conditions with no curative therapies. Common pathomechanisms between IPF and cancer are increasingly recognised, including dysfunctional pan-PI3 kinase (PI3K) signalling as a driver of aberrant proliferative responses. GSK2126458 is a novel, potent, PI3K/mammalian target of rapamycin (mTOR) inhibitor which has recently completed phase I trials in the oncology setting. Our aim was to establish a scientific and dosing framework for PI3K inhibition with this agent in IPF at a clinically developable dose. Methods We explored evidence for pathway signalling in IPF lung tissue and examined the potency of GSK2126458 in fibroblast functional assays and precision-cut IPF lung tissue. We further explored the potential of IPF patient-derived bronchoalveolar lavage (BAL) cells to serve as pharmacodynamic biosensors to monitor GSK2126458 target engagement within the lung. Results We provide evidence for PI3K pathway activation in fibrotic foci, the cardinal lesions in IPF. GSK2126458 inhibited PI3K signalling and functional responses in IPF-derived lung fibroblasts, inhibiting Akt phosphorylation in IPF lung tissue and BAL derived cells with comparable potency. Integration of these data with GSK2126458 pharmacokinetic data from clinical trials in cancer enabled modelling of an optimal dosing regimen for patients with IPF. Conclusions Our data define PI3K as a promising therapeutic target in IPF and provide a scientific and dosing framework for progressing GSK2126458 to clinical testing in this disease setting. A proof-ofmechanism trial of this agent is currently underway. Trial registration number NCT01725139, pre-clinical

Antibacterial effect of copper-bearing titanium alloy (Ti-Cu) against Streptococcus mutans and Porphyromonas gingivalis

This work was financially supported by the National Natural Science Foundation (No. 81301329, No. 81271957 and No. 81530051), Joint foundation of Liaoning Province Natural Science Foundation and Shenyang National Laboratory for materials science (No. 2015021004), Youth Innovation Promotion Association, CAS (No. 2014168), and The Dunhill Medical Trust (R360/0514)