The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

The Ontology Lookup Service (OLS) (http://www.ebi.ac.uk/ols) provides interactive and programmatic interfaces to query, browse and navigate an ever increasing number of biomedical ontologies and controlled vocabularies. The volume of data available for querying has more than quadrupled since it went into production and OLS functionality has been integrated into several high-usage databases and data entry tools. Improvements have been made to both OLS query interfaces, based on user feedback and requirements, to improve usability and service interoperability and provide novel ways to perform queries

A Possible Massive Asteroid Belt Around zeta Lep

We have used the Keck I telescope to image at 11.7 microns and 17.9 microns the dust emission around zeta Lep, a main sequence A-type star at 21.5 pc from the Sun with an infrared excess. The excess is at most marginally resolved at 17.9 microns. The dust distance from the star is probably less than or equal to 6 AU, although some dust may extend to 9 AU. The mass of observed dust is \~10^22 g. Since the lifetime of dust particles is about 10,000 years because of the Poytning-Robertson effect, we robustly estimate at least 4 10^26 g must reside in parent bodies which may be asteroids if the system is in a steady state and has an age of ~300 Myr. This mass is approximately 200 times that contained within the main asteroid belt in our solar system.Comment: 12 pages, 3 figures, ApJL in pres

Correlations of Globular Cluster Properties: Their Interpretations and Uses

Correlations among the independently measured physical properties of globular clusters (GCs) can provide powerful tests for theoretical models and new insights into their dynamics, formation, and evolution. We review briefly some of the previous work, and present preliminary results from a comparative study of GC correlations in the Local Group galaxies. The results so far indicate that these diverse GC systems follow the same fundamental correlations, suggesting a commonality of formative and evolutionary processes which produce them.Comment: An invited review, to appear in "New Horizons in Globular Cluster Astronomy", eds. G. Piotto, G. Meylan, S.G. Djorgovski, and M. Riello, ASPCS, in press (2003). Latex file, 8 pages, 5 eps figures, style files include

A Megacam Survey of Outer Halo Satellites. IV. Two foreground populations possibly associated with the Monoceros substructure in the direction of NGC2419 and Koposov2

The origin of the Galactic halo stellar structure known as the Monoceros ring is still under debate. In this work, we study that halo substructure using deep CFHT wide-field photometry obtained for the globular clusters NGC2419 and Koposov2, where the presence of Monoceros becomes significant because of their coincident projected position. Using Sloan Digital Sky Survey photometry and spectroscopy in the area surrounding these globulars and beyond, where the same Monoceros population is detected, we conclude that a second feature, not likely to be associated with Milky Way disk stars along the line-of-sight, is present as foreground population. Our analysis suggests that the Monoceros ring might be composed of an old stellar population of age t ~ 9Gyr and a new component ~ 4Gyr younger at the same heliocentric distance. Alternatively, this detection might be associated with a second wrap of Monoceros in that direction of the sky and also indicate a metallicity spread in the ring. The detection of such a low-density feature in other sections of this halo substructure will shed light on its nature.Comment: 10 pages, 10 figures, accepted for publication in Ap

Photoassociative spectroscopy at long range in ultracold strontium

We report photoassociative spectroscopy of $^{88}$Sr$_2$ in a magneto-optical trap operating on the ${^1S_0}\to{^3P_1}$ intercombination line at 689 nm. Photoassociative transitions are driven with a laser red-detuned by 600-2400 MHz from the ${^1S_0}\to{^1P_1}$ atomic resonance at 461 nm. Photoassociation takes place at extremely large internuclear separation, and the photoassociative spectrum is strongly affected by relativistic retardation. A fit of the transition frequencies determines the ${^1P_1}$ atomic lifetime ($\tau=5.22 \pm 0.03$ ns) and resolves a discrepancy between experiment and recent theoretical calculations.Comment: 4 pages, 4 figures, submitte

The Next Generation Virgo Cluster Survey (NGVS). XVIII. Measurement and Calibration of Surface Brightness Fluctuation Distances for Bright Galaxies in Virgo (and Beyond)

We describe a program to measure surface brightness fluctuation (SBF) distances to galaxies observed in the Next Generation Virgo Cluster Survey (NGVS), a photometric imaging survey covering $104~deg^2$ of the Virgo cluster in the ${u}^*,g,i,z$ bandpasses with the Canada-France Hawaii Telescope. We describe the selection of the sample galaxies, the procedures for measuring the apparent $i$-band SBF magnitude $\bar{i}$, and the calibration of the absolute $\bar{M}_i$ as a function of observed stellar population properties. The multi-band NGVS data set provides multiple options for calibrating the SBF distances, and we explore various calibrations involving individual color indices as well as combinations of two different colors. Within the color range of the present sample, the two-color calibrations do not significantly improve the scatter with respect to wide-baseline, single-color calibrations involving $u^{*}$. We adopt the ${u}^*{-}z$ calibration as reference for the present galaxy sample, with an observed scatter of 0.11 mag. For a few cases that lack good ${u}^*$ photometry, we use an alternative relation based on a combination of $g{-}i$ and $g{-}z$ colors, with only a slightly larger observed scatter of 0.12 mag. The agreement of our measurements with the best existing distance estimates provides confidence that our measurements are accurate. We present a preliminary catalog of distances for 89 galaxies brighter than $B_T\approx13.0$ mag within the survey footprint, including members of the background M and W Clouds at roughly twice the distance of the main body of the Virgo cluster. The extension of the present work to fainter and bluer galaxies is in progress.Comment: ApJ accepte

Globular Cluster Systems and the Missing Satellite Problem: Implications for Cold Dark Matter Models

We analyze the metallicity distributions of globular clusters belonging to 28 early-type galaxies in the survey of Kundu & Whitmore (2001). A Monte Carlo algorithm which simulates the chemical evolution of galaxies that grow hierarchically via dissipationless mergers is used to determine the most probable protogalactic mass function for each galaxy. Contrary to the claims of Kundu & Whitmore, we find that the observed metallicity distributions are in close agreement with the predictions of such hierarchical formation models. The mass spectrum of protogalactic fragments for the galaxies in our sample has a power-law behavior, with an exponent of roughly -2. This spectrum is indistinguishable from the mass spectrum of dark matter halos predicted by cold dark matter models for structure formation. We argue that these protogalactic fragments, the likely sites of globular cluster formation in the early universe, are the disrupted remains of the "missing" satellite galaxies predicted by cold dark matter models. Our findings suggest that the solution to the missing satellite problem is through the suppression of gas accretion in low-mass halos after reionization, or via self-interacting dark matter, and argue against models with suppressed small-scale power or warm dark matter.Comment: 28 pages, 19 postscript figures. Accepted for publication in the Astrophysical Journa

A Photometric Technique to Search for Be Stars in Open Clusters

We describe a technique to identify Be stars in open clusters using Stromgren b, y, and narrow-band Halpha photometry. We first identify the B-type stars of the cluster using a theoretical isochrone fit to the (b-y, y) color-magnitude diagram. The strongest Be stars are easily identified in a (b-y, y-Halpha) color-color diagram, but those with weaker Halpha emission (classified as possible Be star detections) may be confused with evolved or foreground stars. Here we present such photometry plus Halpha spectroscopy of members of the cluster NGC 3766 to demonstrate the accuracy of our technique. Statistical results on the relative numbers of Be and B-type stars in additional clusters will be presented in a future paper.Comment: 15 pages, 6 figures, 1 table. Accepted by Ap

Different Transport Pathways of Individual Precursor Proteins in Mitochondria

Transport of mitochondrial precursor proteins into mitochondria of Neurospora crassa was studied in a cellfree reconstituted system. Precursors were synthesized in a reticulocyte lysate programmed with Neurospora mRNA and transported into isolated mitochondria in the absence of protein synthesis. Uptake of the following precursors was investigated: apocytochrome c, ADP/ATP carrier and subunit 9 of the oligomycin-sensitive ATPase. Addition of high concentrations of unlabelled chemically prepared apocytochrome c (1–10 μM) inhibited the appearance in the mitochondrial of labelled cytochrome c synthesized in vitro because the unlabelled protein dilutes the labelled one and because the translocation system has a limited capacity [apparent V is 1–3 pmol × min−1× (mg mitochondrial protein)−1]. Concentrations of added apocytochrome c exceeding the concentrations of precursor proteins synthesized in vitro by a factor of about 104 did not inhibit the transfer of ADP/ATP carrier or ATPase subunit 9 into mitochondria. Carbonylcyanide m-chlorophenylhydrazone, an uncoupler of oxidative phosphorylation, inhibited transfer in vitro of ADP/ATP carrier and of ATPase subunit 9, but not of cytochrome c. These findings suggest that cytochrome c and the other two proteins have different import pathways into mitochondria. It can be inferred from the data presented that different 'receptors' on the mitochondrial surface mediate the specific recognition of precursor proteins by mitochondria as a first step in the transport process