Neuraminidase Activity in \u3cem\u3eDiplococcus pneumoniae\u3c/em\u3e

Kelly, R. T. (Marquette University School of Medicine, Milwaukee, Wis.), D. Greiff, and S. Farmer. Neuraminidase activity in Diplococcus pneumoniae. J. Bacteriol. 91:601–603. 1966.—A method for the quantitation of neuraminidase in the presence of N-acetylneuraminic acid aldolase is described. The neuraminidase content of Diplococcus pneumoniae was found to be dependent on the media employed for growth; the highest enzyme activity per milligram of bacterial protein was obtained with Todd-Hewitt broth. Neuraminidase production was stimulated in D. pneumoniae by the addition of N-acetylneuraminlactose, N-acetylneuraminic acid, or N-acetylmannosamine to the growth medium. Three rough strains of D. pneumoniae, which were nonpathogenic for mice, lacked neuraminidase activity. Seven of 12 smooth strains contained neuraminidase; enzyme activity was not detected in the remaining 5 smooth strains. There was no correlation between the presence of neuraminidase activity and the capsular type or between neuraminidase production and animal virulence

Late stage kinetics for various wicking and spreading problems

The kinetics of spreading of a liquid drop in a wedge or V-shaped groove, in a network of such grooves, and on a hydrophilic strip, is re-examined. The length of a droplet of volume Omega spreading in a wedge after a time t is predicted to scale as Omega^(1/5) * t^(2/5), and the height profile is predicted to be a parabola in the distance along the wedge. If the droplet is spreading radially in a sparse network of V-shaped grooves on a surface, the radius is predicted to scale as Omega^(1/6) * t^(1/3), provided the liquid is completely contained within the grooves. A number of other results are also obtained.Comment: 5 pages, 2 figures, RevTeX

First Principles Study of the Electronic and Vibrational Properties of LiNbO2

In the layered transition metal oxide LiNbO$_2$ the Nb$^{3+}$ ($4d^2$) ion is trigonal-prismatically coordinated with O ions, with the resulting crystal field leading to a single band system for low energy properties. A tight-binding representation shows that intraplanar second neighbor hopping $t_2 = 100$ meV dominates the first neighbor interaction ($t_1 = 64$ meV). The first and third neighbor couplings are strongly modified by oxygen displacements of the symmetric Raman-active vibrational mode, and electron-phonon coupling to this motion may provide the coupling mechanism for superconductivity in Li-deficient samples (where $T_c = 5$ K). We calculate all zone-center phonon modes, identify infrared (IR) and Raman active modes, and report LO-TO splitting of the IR modes. The Born effective charges for the metal ions are found to have considerable anisotropy reflecting the degree to which the ions participate in interlayer coupling and covalent bonding. Insight into the microscopic origin of the valence band density, composed of Nb $d_{z^2}$ states with some mixing of O $2p$ states, is obtained from examining Wannier functions for these bands.Comment: 12 pages, 7 figures; Updated with reviewer comments; Updated reference

Measuring storage and loss moduli using optical tweezers: broadband microrheology

We present an experimental procedure to perform broadband microrheological measurements with optical tweezers. A generalised Langevin equation is adopted to relate the time-dependent trajectory of a particle in an imposed flow to the frequency-dependent moduli of the complex fluid. This procedure allows us to measure the material linear viscoelastic properties across the widest frequency range achievable with optical tweezers.Comment: 5 pages, 3 figure

Optical tweezers: wideband microrheology

Microrheology is a branch of rheology having the same principles as conventional bulk rheology, but working on micron length scales and micro-litre volumes. Optical tweezers have been successfully used with Newtonian fluids for rheological purposes such as determining fluid viscosity. Conversely, when optical tweezers are used to measure the viscoelastic properties of complex fluids the results are either limited to the material's high-frequency response, discarding important information related to the low-frequency behavior, or they are supplemented by low-frequency measurements performed with different techniques, often without presenting an overlapping region of clear agreement between the sets of results. We present a simple experimental procedure to perform microrheological measurements over the widest frequency range possible with optical tweezers. A generalised Langevin equation is used to relate the frequency-dependent moduli of the complex fluid to the time-dependent trajectory of a probe particle as it flips between two optical traps that alternately switch on and off.Comment: 13 pages, 6 figures, submitted to Special Issue of the Journal of Optic

Quantum Effects in Black Hole Interiors

The Weyl curvature inside a black hole formed in a generic collapse grows, classically without bound, near to the inner horizon, due to partial absorption and blueshifting of the radiative tail of the collapse. Using a spherical model, we examine how this growth is modified by quantum effects of conformally coupled massless fields.Comment: 13 pages, 1 figure (not included), RevTe

Ultraviolet observations of LMC nova 1988

The IUE obtained ultraviolet spectra of a nova in an external galaxy. The spectral features do not seem unusual for a nova at maximum but it is hoped to be able to follow it for a long enough time to be able to study the high ionization lines that appear when the density drops to lower values (the nebular stage). A high dispersion spectrum was also obtained to assist in the line identification and to study the line of sight to the LMC 1 deg of arc away from SN 1987A

Targeted Assembly of Short Sequence Reads

As next-generation sequence (NGS) production continues to increase, analysis is becoming a significant bottleneck. However, in situations where information is required only for specific sequence variants, it is not necessary to assemble or align whole genome data sets in their entirety. Rather, NGS data sets can be mined for the presence of sequence variants of interest by localized assembly, which is a faster, easier, and more accurate approach. We present TASR, a streamlined assembler that interrogates very large NGS data sets for the presence of specific variants, by only considering reads within the sequence space of input target sequences provided by the user. The NGS data set is searched for reads with an exact match to all possible short words within the target sequence, and these reads are then assembled strin-gently to generate a consensus of the target and flanking sequence. Typically, variants of a particular locus are provided as different target sequences, and the presence of the variant in the data set being interrogated is revealed by a successful assembly outcome. However, TASR can also be used to find unknown sequences that flank a given target. We demonstrate that TASR has utility in finding or confirming ge-nomic mutations, polymorphism, fusion and integration events. Targeted assembly is a powerful method for interrogating large data sets for the presence of sequence variants of interest. TASR is a fast, flexible and easy to use tool for targeted assembly

Observations and simulations of nova Vul 1984 no. 2: A nova with ejecta rich in oxygen, neon, and magnesium

Nova Vul 1984 no. 2 was observed with IUE from Dec. 1984 through Nov. 1987. The spectra are characterized by strong lines from Mg, Ne, C, Si, O, N, and other elements. Data obtained in the ultraviolet, infrared, and optical show that this nova is ejecting material rich in oxygen, neon, and magnesium