TC-1 observations of flux pileup and dipolarization-associated expansion in the near-Earth magnetotail during substorms

Fifty-three substorms measured by Double Star/TC-1 in the near-Earth magnetotail from July to October, 2004 are studied. The main features of these events are: (a) Magnetic flux pileup characterized by continuous enhancement of B z is observed, which starts almost simultaneously with aurora breakup within 1–3 minutes, indicating that substorm onset is in close relation to flux pileup. (b) Sudden plasma sheet expansion with sharp increases in ion temperature and density is seen in all events, which occurs typically ∼11 minutes after the beginning of pileup. The plasma sheet expansion is shown to be in close relation with the primary substorm dipolarization and, hence, can be referred to as ‘dipolarization-associated expansion’. (c) Evidence indicates that the substorm current wedge first forms earthward of TC-1 position and, hence, inward of the flow braking region, and then propagates tailward with an expansion in the Z-direction. Possible implications of these observations are briefly discussed

A new method for class prediction based on signed-rank algorithms applied to Affymetrix® microarray experiments

<p>Abstract</p> <p>Background</p> <p>The huge amount of data generated by DNA chips is a powerful basis to classify various pathologies. However, constant evolution of microarray technology makes it difficult to mix data from different chip types for class prediction of limited sample populations. Affymetrix^®technology provides both a quantitative fluorescence signal and a decision (<it>detection call</it>: absent or present) based on signed-rank algorithms applied to several hybridization repeats of each gene, with a per-chip normalization. We developed a new prediction method for class belonging based on the detection call only from recent Affymetrix chip type. Biological data were obtained by hybridization on U133A, U133B and U133Plus 2.0 microarrays of purified normal B cells and cells from three independent groups of multiple myeloma (MM) patients.</p> <p>Results</p> <p>After a call-based data reduction step to filter out non class-discriminative probe sets, the gene list obtained was reduced to a predictor with correction for multiple testing by iterative deletion of probe sets that sequentially improve inter-class comparisons and their significance. The error rate of the method was determined using leave-one-out and 5-fold cross-validation. It was successfully applied to (i) determine a sex predictor with the normal donor group classifying gender with no error in all patient groups except for male MM samples with a Y chromosome deletion, (ii) predict the immunoglobulin light and heavy chains expressed by the malignant myeloma clones of the validation group and (iii) predict sex, light and heavy chain nature for every new patient. Finally, this method was shown powerful when compared to the popular classification method Prediction Analysis of Microarray (PAM).</p> <p>Conclusion</p> <p>This normalization-free method is routinely used for quality control and correction of collection errors in patient reports to clinicians. It can be easily extended to multiple class prediction suitable with clinical groups, and looks particularly promising through international cooperative projects like the "Microarray Quality Control project of US FDA" MAQC as a predictive classifier for diagnostic, prognostic and response to treatment. Finally, it can be used as a powerful tool to mine published data generated on Affymetrix systems and more generally classify samples with binary feature values.</p