Digital Twin Brain: a simulation and assimilation platform for whole human brain

In this work, we present a computing platform named digital twin brain (DTB) that can simulate spiking neuronal networks of the whole human brain scale and more importantly, a personalized biological brain structure. In comparison to most brain simulations with a homogeneous global structure, we highlight that the sparseness, couplingness and heterogeneity in the sMRI, DTI and PET data of the brain has an essential impact on the efficiency of brain simulation, which is proved from the scaling experiments that the DTB of human brain simulation is communication-intensive and memory-access intensive computing systems rather than computation-intensive. We utilize a number of optimization techniques to balance and integrate the computation loads and communication traffics from the heterogeneous biological structure to the general GPU-based HPC and achieve leading simulation performance for the whole human brain-scaled spiking neuronal networks. On the other hand, the biological structure, equipped with a mesoscopic data assimilation, enables the DTB to investigate brain cognitive function by a reverse-engineering method, which is demonstrated by a digital experiment of visual evaluation on the DTB. Furthermore, we believe that the developing DTB will be a promising powerful platform for a large of research orients including brain-inspiredintelligence, rain disease medicine and brain-machine interface.Comment: 12 pages, 11 figure

New cave-dwelling species of Tomoceridae from China, with a study on the pattern of mesothoracic bothriotricha in Tomocerinae (Collembola, Entomobryomorpha)

Two new troglobitic species of Tomoceridae are described from Guizhou and Guangxi provinces, China. Tomocerus tiani sp. n. resembles Tomocerus kinoshitai Yosii, 1954, Tomocerus caecus Yu & Deharveng, 2015 and Tomocerus similis Chen & Ma, 1997 but differs from them mainly in the body colour, the cephalic chaetotaxy and the number of manubrial pseudopores. Monodontocerus cinereus sp. n. is similar to Monodontocerus mulunensis Yu, Deharveng & Zhang, 2014 but is different from the latter in the body colour, the length of antennae, the number of ungual teeth and the chaetotaxy on Abd. III and Abd. IV. Special remarks are made on the mesothoracic bothriotricha in Tomocerinae

New cave-dwelling species of Tomoceridae from China, with a study on the pattern of mesothoracic bothriotricha in Tomocerinae (Collembola, Entomobryomorpha)

Two new troglobitic species of Tomoceridae are described from Guizhou and Guangxi provinces, China. Tomocerus tiani sp. n. resembles Tomocerus kinoshitai Yosii, 1954, Tomocerus caecus Yu & Deharveng, 2015 and Tomocerus similis Chen & Ma, 1997 but differs from them mainly in the body colour, the cephalic chaetotaxy and the number of manubrial pseudopores. Monodontocerus cinereus sp. n. is similar to Monodontocerus mulunensis Yu, Deharveng & Zhang, 2014 but is different from the latter in the body colour, the length of antennae, the number of ungual teeth and the chaetotaxy on Abd. III and Abd. IV. Special remarks are made on the mesothoracic bothriotricha in Tomocerinae

Insights into the Genomic Regions and Candidate Genes of Senescence-Related Traits in Upland Cotton via GWAS

Senescence is the last stage of plant development and is controlled by both internal and external factors. Premature senescence significantly affects the yield and quality of cotton. However, the genetic architecture underlying cotton senescence remains unclear. In this study, genome-wide association studies (GWAS) were performed based on 3,015,002 high-quality SNP markers from the resequencing data of 355 upland cotton accessions to detect genomic regions for cotton senescence. A total of 977 candidate genes within 55 senescence-related genomic regions (SGRs), SGR1–SGR55, were predicted. Gene ontology (GO) analysis of candidate genes revealed that a set of biological processes was enriched, such as salt stress, ethylene processes, and leaf senescence. Furthermore, in the leaf senescence GO term, one candidate gene was focused on: Gohir.A12G270900 (GhMKK9), located in SGR36, which encodes a protein of the MAP kinase kinase family. Quantitative real-time PCR (qRT-PCR) analysis showed that GhMKK9 was up-regulated in old cotton leaves. Overexpression of GhMKK9 in Arabidopsis accelerated natural leaf senescence. Virus-induced gene silencing (VIGS) of GhMKK9 in cotton increased drought tolerance. These results suggest that GhMKK9 is a positive regulator and might be involved in drought-induced senescence in cotton. The results provide new insights into the genetic basis of cotton senescence and will be useful for improving cotton breeding in the future

Characterization and Functional Analysis of GhNAC82, A NAM Domain Gene, Coordinates the Leaf Senescence in Upland Cotton (Gossypium hirsutum L.)

In the process of growth and development, cotton exhibits premature senescence under various abiotic stresses, impairing yield and fiber quality. NAC (NAM, ATAF1,2, and CUC2) protein widely distributed in land plants, play the critical role in responding to abiotic stress and regulating leaf senescence. We have identified and functional analyzed a NAM domain gene GhNAC82 in upland cotton, it was located on the A11 chromosome 4,921,702 to 4,922,748 bp, only containing one exon. The spatio-temporal expression pattern analysis revealed that it was highly expressed in root, torus, ovule and fiber development stage. The results of qRT-PCR validated that GhNAC82 negatively regulated by salt stress, drought stress, H2O2 stress, IAA treatment, and ethylene treatment, positively regulated by the ABA and MeJA treatment. Moreover, heterologous overexpression of GhNAC82 results in leaf premature senescence and delays root system development in Arabidopsis thaliana. The phenotype of delayed-senescence was performed after silencing GhNAC82 by VIGS in premature cotton. Taken together, GhNAC82 was involved in different abiotic stress pathways and play important roles in negatively regulating leaf premature senescence

The Effect of Neonicotinoid Insecticide and Fungicide on Sugar Responsiveness and Orientation Behavior of Honey Bee (Apis mellifera) in Semi-Field Conditions

Neonicotinoid insecticides are in widespread use around the world, cause pollinator decline. We used semi-field conditions to determine the effect of sublethal insecticide, thiamethoxam, exposure on orientation behavior and sugar responsiveness. Bees could not reject the non-treated flower or the insecticide or insecticide/fungicide treated flower. After bees consumed the insecticide or insecticide/fungicide treated nectar, they could not discriminate between a flower odor or blank control in a Y-maze when making a first choice. We also found that treated bees wander back and forth in both arms to make a final decision about food location, and used longer duration in the Y maze than the control group. Sugar responsiveness was also reduced after bees were fed with insecticide or insecticide/fungicide treated food, one week was needed for them to display the same level of responsiveness as the control group. The thiamethoxam or thiamethoxam/carbendazol treated crop field does not act as an olfactory repellent to the bee, but it does affect its post-consumption behavior

DTBVis: An interactive visual comparison system for digital twin brain and human brain

The digital twin brain (DTB) computing model from brain-inspired computing research is an emerging artificial intelligence technique, which is realized by a computational modeling approach of hardware and software. It can achieve various cognitive abilities and their synergistic mechanisms in a manner similar to the human brain. Given that the task of the DTB is to simulate the functions of the human brain, comparing the similarities and differences between the two is crucial. However, the visualization study of the DTB is still under-researched. Moreover, the complexity of the datasets (multilevel spatiotemporal granularity and different types of comparison tasks) presents new challenges to the analysis and exploration of visualization. Therefore, in this study, we proposed DTBVis, a visual analytics system that supports comparison tasks for the DTB. DTBVis supports iterative explorations from different levels and at different granularities. Combined with automatic similarity recommendation, and high-dimensional exploration, DTBVis can assist experts in understanding the similarities and differences between the DTB and the human brain, thus helping them adjust their model and enhance its functionality. The highest level of DTBVis shows an overview of the datasets from the brain, which is used for comparison and exploration of the function and structure of the DTB and the human brain. The medium level is used for the comparison and exploration of a designated brain region. The low level can analyze a designated brain voxel. We worked closely with experts of brain science and held regular seminars with them. Feedback from the experts indicates that our approach helps them conduct comparative studies of the DTB and human brain and make modeling adjustments of the DTB through intuitive visual comparisons and interactive explorations

Evaluation of Highly Detectable Pesticides Sprayed in Brassica napus L.: Degradation Behavior and Risk Assessment for Honeybees

Honeybees are major pollinators of agricultural crops and many other plants in natural ecosystems alike. In recent years, managed honeybee colonies have decreased rapidly. The application of pesticides is hypothesized to be an important route leading to colony loss. Herein, a quick, easy, cheap, effective, rugged, and safe (QuEChERS) method was used to determine eight highly detectable pesticides (carbendazim, prochloraz, pyrimethanil, fenpropathrin, chlorpyrifos, imidacloprid, thiamethoxam, and acetamiprid) in rape flowers. A field experiment was conducted at the recommended dose to evaluate the contact exposure risk posed to honeybees for 0–14 days after treatment. The initial residue deposits of neonicotinoids and fungicides among these compounds were 0.4–1.3 mg/kg and 11.7–32.3 mg/kg, respectively, and 6.4 mg/kg for fenpropathrin and 4.2 mg/kg for chlorpyrifos. The risk was quantified using the flower hazard quotient (FHQ) value. According to the data, we considered imidacloprid, thiamethoxam, chlorpyrifos, fenpropathrin, and prochloraz to pose an unacceptable risk to honeybees after spraying in fields, while fungicides (carbendazim and pyrimethanil) and acetamiprid posed moderate or acceptable risks to honeybees. Therefore, acetamiprid can be used instead of imidacloprid and thiamethoxam to protect rape from some insects in agriculture, and the application of prochloraz should be reduced

Research Advances in Clinical Applications, Anticancer Mechanism, Total Chemical Synthesis, Semi-Synthesis and Biosynthesis of Paclitaxel

Paclitaxel, a natural secondary metabolite isolated and purified from the bark of the Taxus tree, is considered one of the most successful natural anticancer drugs due to its low toxicity, high potency and broad-spectrum anticancer activity. Taxus trees are scarce and slow-growing, and with extremely low paclitaxel content, the contradiction between supply and demand in the market is becoming more and more intense. Therefore, researchers have tried to obtain paclitaxel by various methods such as chemical synthesis, artificial culture, microbial fermentation and tissue cell culture to meet the clinical demand for this drug. This paper provides a comprehensive overview of paclitaxel extraction, combination therapy, total synthesis, semi-synthesis and biosynthesis in recent years and provides an outlook, aiming to provide a theoretical basis and reference for further research on the production and application of paclitaxel in the future

Characterization of fusion boundary between low alloy steel and stainless steel cladding

The microstructure and hardness of fusion boundary (FB) and near FB of a low alloy steel (LAS) 16MND5 welding cladded with stainless steel 308L for nuclear reactor pressure vessel were investigated by using modern electron microscopes and nano-indenter. The wavy morphology of fusion line results in changes of nearby microstructures of both cladding 308L and substrate 16MND5 along the FB. The microstructure of the cladding 308L is composed of columnar grains adjacent most of the FB, but it is equiaxed grains at the valley of the wavy fusion line with large curvature. The microstructures of 16MND5 near the FB are ferrite at the wavy fusion line with large curvature, martensite at the wavy fusion line with small curvature, and transition mixed structure between them. A carbide-depleted zone adjacent to the FB was observed in the 16MND5 side, of which the hardness is lower than both FB and 16MND5 base metal. Three types of FB can be observed according to the width, being narrow or sharp FB, needle-like martensite FB, and partially-mixed zone FB. The FB includes high density of carbides of M7C3 and M3C, leading to a hardness peak at FB