Molecular cloning of chicken transforming growth factor β1 and isolation of microsatellites

Transforming growth factor-Bs (TGFBs) are candidate genes in the control of chicken development and growth. It is very important to study the expression, regulation and functions of these genes.Microsatellites are ideal DNA markers for genetic linkage studies and genome mapping. An increasing numbers of studies have demonstrated that they may also be involved in DNA homologous recombination, gene regulation and genome rearrangement in vivo. The [CAG/CTG]n triplets have an important role in transcriptional factors.We have attempted to clone the 5' region of the chicken TGFB1 gene to facilitate a more detailed analysis of the expression and developmental role of TGFBs. We have developed a method for enriching microsatellites in chicken DNA libraries to facilitate the generation of polymorphic markers and the identification of potential transcriptional factors.We have shown that chicken TGFB1 exists as an single copy gene with an upper size limit of approximately 15 to 22 kb. However, screening of a lambda phage chicken genomic library using both the TGFB1 cDNA and oligo probes failed to obtain chicken TGFB1 clones.Procedures were developed for the construction of specific microsatellite-enriched DNA libraries. [CA/TG] n-enriched genomic DNA libraries were constructed using "genetic marker selection" and DNA affinity hybridisation procedures; whereas [CA/TG] n- and [CAG/CTG] n-enriched liver cDNA libraries were constructed by a DNA affinity hybridisation procedure. The frequency of positive clones in the DNA libraries constructed ranged from 0.5% to 5% depending on the type of microsatellite repeat. An enrichment of 50 fold over the classical small-insert DNA libraries has been achieved. Microsatellite-positive clones from both the genomic DNA libraries and the cDNA libraries were identified and characterised by sequencing. Microsatellite polymorphisms were studied by polymerase chain reaction and are being mapped using the EAST LANSING and COMPTON reference mapping crosses. A search of the non-redundant databases using the available information of expressed sequences revealed chicken homologues of human transcriptional factor, myocyte enhancer factor 2D (MEF2D) and human Fragile X syndrome (FMR1) as well as a substantial number of new other genes. The differential pattern of expression of the chicken MEF2D gene was examined in different chicken tissues and at various ages. A ubiquitous distribution of chicken MEF2D transcripts was revealed. Chromosome mapping and a study of the pattern of expression of these genes is underway. Comparative mapping of closely related avian species using microsatellite markers from chicken cDNA library is discussed.The isolation of these microsatellites will facilitate the mapping of economically important quantitative traits in chicken. The mapping of expressed sequences will help to define candidate genes of these and other traits

SEL1L deficiency impairs growth and differentiation of pancreatic epithelial cells

<p>Abstract</p> <p>Background</p> <p>The vertebrate pancreas contains islet, acinar and ductal cells. These cells derive from a transient pool of multipotent pancreatic progenitors during embryonic development. Insight into the genetic determinants regulating pancreatic organogenesis will help the development of cell-based therapies for the treatment of diabetes mellitus. <it>Suppressor enhancer lin12/Notch 1 like (Sel1l</it>) encodes a cytoplasmic protein that is highly expressed in the developing mouse pancreas. However, the morphological and molecular events regulated by <it>Sel1l </it>remain elusive.</p> <p>Results</p> <p>We have characterized the pancreatic phenotype of mice carrying a gene trap mutation in <it>Sel1l</it>. We show that <it>Sel1l </it>expression in the developing pancreas coincides with differentiation of the endocrine and exocrine lineages. Mice homozygous for the gene trap mutation die prenatally and display an impaired pancreatic epithelial morphology and cell differentiation. The pancreatic epithelial cells of <it>Sel1l </it>mutant embryos are confined to the progenitor cell state throughout the secondary transition. Pharmacological inhibition of Notch signaling partially rescues the pancreatic phenotype of <it>Sel1l </it>mutant embryos.</p> <p>Conclusions</p> <p>Together, these data suggest that <it>Sel1l </it>is essential for the growth and differentiation of endoderm-derived pancreatic epithelial cells during mouse embryonic development.</p

Early pancreatic development requires the vertebrate Suppressor of Hairless (RBPJ) in the PTF1 bHLH complex

PTF1a is an unusual basic helix–loop–helix (bHLH) transcription factor that is required for the development of the pancreas. We show that early in pancreatic development, active PTF1a requires interaction with RBPJ, the vertebrate Suppressor of Hairless, within a stable trimeric DNA-binding complex (PTF1). Later, as acinar cell development begins, RBPJ is swapped for RBPJL, the constitutively active, pancreas-restricted paralog of RBPJ. Moreover, the Rbpjl gene is a direct target of the PTF1 complex: At the onset of acinar cell development when the Rbpjl gene is first induced, a PTF1 complex containing RBPJ is bound to the Rbpjl promoter. As development proceeds, RBPJL gradually replaces RBPJ in the PTF1 complex bound to Rbpjl and appears on the binding sites for the complex in the promoters of other acinar-specific genes, including those for the secretory digestive enzymes. A single amino acid change in PTF1a that eliminates its ability to bind RBPJ (but does not affect its binding to RBPJL) causes pancreatic development to truncate at an immature stage, without the formation of acini or islets. These results indicate that the interaction between PTF1a and RBPJ is required for the early stage of pancreatic growth, morphogenesis, and lineage fate decisions. The defects in pancreatic development phenocopy those of Ptf1a-null embryos; thus, the first critical function of PTF1a is in the context of the PTF1 complex containing RBPJ. Action within an organ-specific transcription factor is a previously unknown function for RBPJ and is independent of its role in Notch signaling

The Sel1L-Hrd1 Endoplasmic Reticulum-Associated Degradation Complex Manages a Key Checkpoint in B Cell Development

Endoplasmic reticulum (ER)-associated degradation (ERAD) is a principal mechanism that targets ER-associated proteins for cytosolic proteasomal degradation. Here, our data demonstrate a critical role for the Sel1L-Hrd1 complex, the most conserved branch of ERAD, in early B cell development. Loss of Sel1L-Hrd1 ERAD in B cell precursors leads to a severe developmental block at the transition from large to small pre-B cells. Mechanistically, we show that Sel1L-Hrd1 ERAD selectively recognizes and targets the pre-B cell receptor (pre-BCR) for proteasomal degradation in a BiP-dependent manner. The pre-BCR complex accumulates both intracellularly and at the cell surface in Sel1L-deficient pre-B cells, leading to persistent pre-BCR signaling and pre-B cell proliferation. This study thus implicates ERAD mediated by Sel1L-Hrd1 as a key regulator of B cell development and reveals the molecular mechanism underpinning the transient nature of pre-BCR signaling

Hepatic Sel1L-Hrd1 ER-Associated Degradation (ERAD) manages FGF21 levels and systemic metabolism via CREBH

Fibroblast growth factor 21 (Fgf21) is a liver-derived, fasting-induced hormone with broad effects on growth, nutrient metabolism and insulin sensitivity. Here, we report the discovery of a novel mechanism regulating Fgf21 expression under growth and fasting-feeding. The Sel1LHrd1 complex is the most conserved branch of mammalian endoplasmic reticulum (ER)- associated degradation (ERAD) machinery. Mice with liver-specific deletion of Sel1L exhibit growth retardation with markedly elevated circulating Fgf21, reaching levels close to those in Fgf21 transgenic mice or pharmacological models. Mechanistically, we show that the Sel1LHrd1 ERAD complex controls Fgf21 transcription by regulating the ubiquitination and turnover (and thus nuclear abundance) of ER-resident transcription factor Crebh, while having no effect on the other well-known Fgf21 transcription factor Pparα. Our data reveal a physiologically regulated, inverse correlation between Sel1L-Hrd1 ERAD and Crebh-Fgf21 levels under fasting-feeding and growth. This study not only establishes the importance of Sel1L-Hrd1 ERAD in the liver in the regulation of systemic energy metabolism, but also reveals a novel hepatic “ERADCrebh- Fgf21” axis directly linking ER protein turnover to gene transcription and systemic metabolic regulation

Hepatic Sel1L-Hrd1 ER-associated degradation (ERAD) manages FGF21 levels and systemic metabolism via CREBH

Fibroblast growth factor 21 (Fgf21) is a liver-derived, fasting-induced hormone with broad effects on growth, nutrient metabolism, and insulin sensitivity. Here, we report the discovery of a novel mechanism regulating Fgf21 expression under growth and fasting-feeding. The Sel1L-Hrd1 complex is the most conserved branch of mammalian endoplasmic reticulum (ER)-associated degradation (ERAD) machinery. Mice with liver-specific deletion of Sel1L exhibit growth retardation with markedly elevated circulating Fgf21, reaching levels close to those in Fgf21 transgenic mice or pharmacological models. Mechanistically, we show that the Sel1L-Hrd1 ERAD complex controls Fgf21 transcription by regulating the ubiquitination and turnover (and thus nuclear abundance) of ER-resident transcription factor Crebh, while having no effect on the other well-known Fgf21 transcription factor Pparα. Our data reveal a physiologically regulated, inverse correlation between Sel1L-Hrd1 ERAD and Crebh-Fgf21 levels under fasting-feeding and growth. This study not only establishes the importance of Sel1L-Hrd1 ERAD in the liver in the regulation of systemic energy metabolism, but also reveals a novel hepatic “ERAD-Crebh-Fgf21” axis directly linking ER protein turnover to gene transcription and systemic metabolic regulation.</p

Regulatory Roles of Conserved Intergenic Domains in Vertebrate Dlx Bigene Clusters

Dlx homeobox genes of vertebrates are generally arranged as three bigene clusters on distinct chromosomes. The Dlx1/Dlx2, Dlx5/Dlx6, and Dlx3/Dlx7 clusters likely originate from duplications of an ancestral Dlx gene pair. Overlaps in expression are often observed between genes from the different clusters. To determine if the overlaps are a result of the conservation of enhancer sequences between paralogous clusters, we compared the Dlx1/2 and the Dlx5/Dlx6 intergenic regions from human, mouse, zebrafish, and from two pufferfish, Spheroides nephelus and Takifugu rubripes. Conservation between all five vertebrates is limited to four sequences, two in Dlx1/Dlx2 and two in Dlx5/Dlx6. These noncoding sequences are >75% identical over a few hundred base pairs, even in distant vertebrates. However, when compared to each other, the four intergenic sequences show a much more limited similarity. Each intergenic sequence acts as an enhancer when tested in transgenic animals. Three of them are active in the forebrain with overlapping patterns despite their limited sequence similarity. The lack of sequence similarity between paralogous intergenic regions and the high degree of sequence conservation of orthologous enhancers suggest a rapid divergence of Dlx intergenic regions early in chordate/vertebrate evolution followed by fixation of cis-acting regulatory elements. [Supplemental material is available online at www.genome.org.