Plant resistance to tomato yellow leaf curl virus is enhanced by Bacillus amyloliquefaciens Ba13 through modulation of RNA interference

IntroductionTomato yellow leaf curl virus (TYLCV), which is a typical member of the genus Begomovirus, causes severe crop yield losses worldwide. RNA interference (RNAi) is an important antiviral defense mechanism in plants, but whether plant beneficial microbes used as biocontrol agents would modulate RNAi in defense against TYLCV remains unclear.MethodsHere, we employed whole-transcriptome, bisulfite, and small RNA sequencing to decipher the possible role of Bacillus amyloliquefaciens Ba13 as a bacterial biocontrol agent against TYLCV in RNAi modulation.ResultsPotted tomato plants were exposed to whiteflies for natural viral infection 14 days after bacterial inoculation. Compared with non-inoculated controls, the abundance of TYLCV gene in the leaves of inoculated plants decreased by 70.1% at 28 days post-infection, which mirrored the pattern observed for plant disease index. The expression of the ARGONAUTE family genes (e.g., AGO3, AGO4, AGO5, and AGO7) involved in antiviral defense markedly increased by 2.44–6.73-fold following bacterial inoculation. The methylation level at CpG site 228 (in the open reading frame region of the RNA interference suppressing gene AV2) and site 461 (in the open reading frame regions of AV1 and AV2) was 183.1 and 63.0% higher in inoculated plants than in non-inoculated controls, respectively. The abundances of 10 small interfering RNAs matched to the TYLCV genome were all reduced in inoculated plants, accompanied by enhancement of photosystem and auxin response pathways.DiscussionThe results indicate that the application of Ba. amyloliquefaciens Ba13 enhances plant resistance to TYLCV through RNAi modulation by upregulating RNAi-related gene expression and enhancing viral genome methylation

Root growth, available soil water, and water-use efficiency of winter wheat under different irrigation regimes applied at different growth stages in North China

Field experiments were conducted at the Luancheng Agro-Ecosystem Experimental Station of the Chinese Academy of Sciences during the winter wheat growing seasons in 2006-2007 and 2007-2008. Experiments involving winter wheat with 1, 2, and 3 irrigation applications at jointing, heading, or milking were conducted, and the total irrigation water supplied was maintained at 120 mm. The results indicated that irrigation during the later part of the winter wheat growing season and increase in irrigation frequency decreased the available soil water; this result was mainly due to the changes in the vertical distribution of root length density. In 30-cm-deep soil profiles, 1 time irrigation at jointing resulted in the highest root length density. With regard to evapotranspiration (ET), there was no significant (LSD, P Root length density Available soil water Water-use efficiency Winter wheat Deficit irrigation

Effects of elevated CO2 concentration on growth and water use efficiency of winter wheat under two soil water regimes

Winter wheat (Triticum aestivum L. cv. Kenong9204) was grown in open top chambers with either ambient or elevated CO2 concentrations (358 ± 19 [mu]mol mol-1 or 712 ± 22 [mu]mol mol-1, respectively) in well-watered or drought conditions. Although elevated CO2 did not significantly affect the height of the plants at harvest, it significantly increased the aboveground biomass by 10.1% and the root/shoot ratio by 16.0%. Elevated CO2 also significantly increased the grain yield (GY) by 6.7% when well-watered and by 10.4% when drought stressed. Specifically, in the well-watered condition, this increase was due to a greater number of ears (8.7% more) and kernels (8.6). In the drought condition, it was only due to a greater number of spikes (17.1% more). In addition, elevated CO2 also significantly increased the water use efficiency (WUE) of the plants by 9.9% when well-watered and by 13.8% under drought conditions, even though the evapotranspiration (ET) of the plants did not change significantly. Elevated CO2 also significantly increased the root length in the top half of the soil profile by 35.4% when well-watered and by 44.7% under drought conditions. Finally, elevated CO2 significantly increased the root water uptake by 52.9% when well-watered and by 10.1% under drought conditions. These results suggest that (1) future increases in atmospheric CO2 concentration may have a significant effect on wheat production in arid and semiarid areas where wheat cultivation requires upland cropping or deficit irrigation; (2) wheat cultivars can be developed to have more tillers and kernels through selective breeding and field management; and (3) fertilizer and water management in topsoil will become increasingly important as atmospheric CO2 concentration rises.Elevated CO2 concentration Grain yield (GY) Water use efficiency (WUE) Root/shoot ratio (RSR) Root distribution Soil water depletion (SWD)

Data_Sheet_1_Plant resistance to tomato yellow leaf curl virus is enhanced by Bacillus amyloliquefaciens Ba13 through modulation of RNA interference.docx

IntroductionTomato yellow leaf curl virus (TYLCV), which is a typical member of the genus Begomovirus, causes severe crop yield losses worldwide. RNA interference (RNAi) is an important antiviral defense mechanism in plants, but whether plant beneficial microbes used as biocontrol agents would modulate RNAi in defense against TYLCV remains unclear.MethodsHere, we employed whole-transcriptome, bisulfite, and small RNA sequencing to decipher the possible role of Bacillus amyloliquefaciens Ba13 as a bacterial biocontrol agent against TYLCV in RNAi modulation.ResultsPotted tomato plants were exposed to whiteflies for natural viral infection 14 days after bacterial inoculation. Compared with non-inoculated controls, the abundance of TYLCV gene in the leaves of inoculated plants decreased by 70.1% at 28 days post-infection, which mirrored the pattern observed for plant disease index. The expression of the ARGONAUTE family genes (e.g., AGO3, AGO4, AGO5, and AGO7) involved in antiviral defense markedly increased by 2.44–6.73-fold following bacterial inoculation. The methylation level at CpG site 228 (in the open reading frame region of the RNA interference suppressing gene AV2) and site 461 (in the open reading frame regions of AV1 and AV2) was 183.1 and 63.0% higher in inoculated plants than in non-inoculated controls, respectively. The abundances of 10 small interfering RNAs matched to the TYLCV genome were all reduced in inoculated plants, accompanied by enhancement of photosystem and auxin response pathways.DiscussionThe results indicate that the application of Ba. amyloliquefaciens Ba13 enhances plant resistance to TYLCV through RNAi modulation by upregulating RNAi-related gene expression and enhancing viral genome methylation.</p