Non-Rotating Convective Self-Aggregation in a Limited Area AGCM

We present non-rotating simulations with the Goddard Earth Observing System (GEOS) atmospheric general circulation model (AGCM) in a square limited area domain over uniform sea surface temperature. As in previous studies, convection spontaneously aggregates into humid clusters, driven by a combination of radiative and moisture-convective feedbacks. The aggregation is qualitatively independent of resolution, with horizontal grid spacing from 3 km to 110 km, with both explicit and parameterized deep convection. A budget for the spatial variance of column moist static energy suggests that longwave radiative and surface flux feedbacks help establish aggregation, while the shortwave feedback contributes to its maintenance. Mechanism denial experiments confirm that aggregation does not occur without interactive longwave radiation. Ice cloud radiative effects help support the humid convecting regions, but are not essential for aggregation, while liquid clouds have a negligible effect. Removing the dependence of parameterized convection on tropospheric humidity reduces the intensity of aggregation, but does not prevent the formation of dry regions. In domain sizes less than (5000 km)squared, the aggregation takes the form of a single cluster, while larger domains develop multiple clusters. Larger domains initialized with a single large cluster are unable to maintain them, suggesting an upper size limit. Surface windspeed increases with domain size, implying that maintenance of the boundary layer momentum balance may limit cluster size. As cluster size increases, large boundary layer temperature anomalies develop to maintain the surface pressure gradient, leading to an increase in the depth of parameterized convective heating and an increase in gross moist stability

A Cradle to Farm Gate Life Cycle Analysis of Land Use in U.S. Pork Production

The goal of this study was to conduct a detailed Life Cycle Assessment (LCA) of the U.S. live swine production supply chain to quantify land use requirements and to assess the impact associated with various ration compositions. The functional unit was defined as one kilogram (2.2 pounds) of live swine at the farm gate, ready for transport to the abattoir. This assessment focused on the three highest producing USDA regions, which encompassed the Midwest (Regions 5 and 7) and the Southeast (Region 4), representing 86% of U.S. market hog production. First, a literature review was conducted to summarize the most current information and knowledge regarding the status of land use accounting in agriculture and livestock production. The literature review identified work reported by other researchers and organizations, nationally and internationally, and was used to guide the methods and help create the life cycle inventory (LCI) for the detailed LCA. The study showed that the average land occupation required to produce 1 kg of live swine weight (LW) in the U.S. was 4.22 m2a. This result is based on a feed ration that was intended to represent a typical U.S. swine ration, referred to as the baseline. Regional results were calculated assuming corn, DDGs, and soybean meal were sourced within each production region, excluding Region 4, which assumed 70% of the feed was a commodity average. Swine in Region 4 had the highest land occupation at 4.59 m2a/kg LW, followed by 4.13 m2a/kg LW in Region 5 and 4.11 m2a/kg LW in Region 7. In addition to the baseline diet, six diet scenarios were modeled to assess the impact of ration composition. A linear programming model was used to construct four ration manipulation strategies intended to lower cost, carbon footprint, water use, and land use. Two more rations were included to assess the increased use of synthetic amino acids. All scenario diets showed impact reductions from the baseline in one or more categories ranging from 2% to 73%. However, each diet also resulted in greater impacts for at least one of the other categories

File Specification for the 7-km GEOS-5 Nature Run, Ganymed Release Non-Hydrostatic 7-km Global Mesoscale Simulation

This document describes the gridded output files produced by a two-year global, non-hydrostatic mesoscale simulation for the period 2005-2006 produced with the non-hydrostatic version of GEOS-5 Atmospheric Global Climate Model (AGCM). In addition to standard meteorological parameters (wind, temperature, moisture, surface pressure), this simulation includes 15 aerosol tracers (dust, sea-salt, sulfate, black and organic carbon), O3, CO and CO2. This model simulation is driven by prescribed sea-surface temperature and sea-ice, daily volcanic and biomass burning emissions, as well as high-resolution inventories of anthropogenic sources. A description of the GEOS-5 model configuration used for this simulation can be found in Putman et al. (2014). The simulation is performed at a horizontal resolution of 7 km using a cubed-sphere horizontal grid with 72 vertical levels, extending up to to 0.01 hPa (approximately 80 km). For user convenience, all data products are generated on two logically rectangular longitude-latitude grids: a full-resolution 0.0625 deg grid that approximately matches the native cubed-sphere resolution, and another 0.5 deg reduced-resolution grid. The majority of the full-resolution data products are instantaneous with some fields being time-averaged. The reduced-resolution datasets are mostly time-averaged, with some fields being instantaneous. Hourly data intervals are used for the reduced-resolution datasets, while 30-minute intervals are used for the full-resolution products. All full-resolution output is on the model's native 72-layer hybrid sigma-pressure vertical grid, while the reduced-resolution output is given on native vertical levels and on 48 pressure surfaces extending up to 0.02 hPa. Section 4 presents additional details on horizontal and vertical grids. Information of the model surface representation can be found in Appendix B. The GEOS-5 product is organized into file collections that are described in detail in Appendix C. Additional details about variables listed in this file specification can be found in a separate document, the GEOS-5 File Specification Variable Definition Glossary. Documentation about the current access methods for products described in this document can be found on the GEOS-5 Nature Run portal: http://gmao.gsfc.nasa.gov/projects/G5NR. Information on the scientific quality of this simulation will appear in a forthcoming NASA Technical Report Series on Global Modeling and Data Assimilation to be available from http://gmao.gsfc.nasa.gov/pubs/tm/

Tropical Cyclones, Hurricanes, and Climate: NASA's Global Cloud-Scale Simulations and New Observations that Characterize the Lifecycle of Hurricanes

One of the primary interests of Global Change research is the impact of climate changes and climate variability on extreme weather events, such as intense tropical storms and hurricanes. Atmospheric climate models run at resolutions of global weather models have been used to study the impact of climate variability, as seen in sea surface temperatures, on the frequency and intensity of tropical cyclones. NASA's Goddard Earth Observing System Model, version 5 (GEOS-5) in ensembles run at 50 km resolution has been able to reproduce the interannual variations of tropical cyclone frequency seen in nature. This, and other global models, have found it much more difficult to reproduce the interannual changes in intensity, a result that reflects the inability of the models to simulate the intensities of the most extreme storms. Better representation of the structures of cyclones requires much higher resolution models. Such improved representation is also fundamental to making best use of satellite observations. In collaboration with NOAA's Geophysical Fluid Dynamics Laboratory, GEOS-5 now has the capability of running at much higher resolution to better represent cloud-scale resolutions. Global simulations at cloud-permitting resolutions (10- to 3.5-km) allows for the development of realistic tropical cyclones from tropical storm 119 km/hr winds) to category 5 (>249km1hr winds) intensities. GEOS-5 has produced realistic rain-band and eye-wall structures in tropical cyclones that can be directly analyzed against satellite observations. For the first time a global climate model is capable of representing realistic intensity and track variability on a seasonal scale across basins. GEOS-5 is also used in assimilation mode to test the impact of NASA's observations on tropical cyclone forecasts. One such test, for tropical cyclone Nargis in the Indian Ocean in May 2008, showed that observations from Atmospheric Infrared Sounder (AIRS) and the Advanced Microwave Sounding Unit (AMSU-A) on Aqua substantially reduced forecast track errors. Tropical cyclones in the northern Indian Ocean pose serious challenges to operational weather forecasting systems, partly due to their shorter lifespan and more erratic track, compared to those in the Atlantic and the Pacific. SA is also bringing several state of the art instruments in recent field campaigns to peer under the clouds and study the inner workings of the tropical storms. With the Genesis and Rapid Intensification Processes (GRIP) experiment, a NASA Earth science field experiment in 2010 that includes the Global Hawk Unmanned Airborne System (UAS) configured with a suite of in situ and remote sensing instruments that are observing and characterizing the lifecycle of hurricanes, we expect significant improvement in our understanding of the track and intensification processes with the assimilation of the satellite and field campaign observations of meteorological parameters in the numerical prediction models

Carbon assimilation strategies in ultrabasic groundwater: clues from the integrated study of a serpentinization-influenced aquifer

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Seyler, L. M., Brazelton, W. J., McLean, C., Putman, L. I., Hyer, A., Kubo, M. D. Y., Hoehler, T., Cardace, D., & Schrenk, M. O. . Carbon assimilation strategies in ultrabasic groundwater: clues from the integrated study of a serpentinization-influenced aquifer. mSystems, 5(2), (2020): e00607-00619, doi: 10.1128/mSystems.00607-19.Serpentinization is a low-temperature metamorphic process by which ultramafic rock chemically reacts with water. Such reactions provide energy and materials that may be harnessed by chemosynthetic microbial communities at hydrothermal springs and in the subsurface. However, the biogeochemistry mediated by microbial populations that inhabit these environments is understudied and complicated by overlapping biotic and abiotic processes. We applied metagenomics, metatranscriptomics, and untargeted metabolomics techniques to environmental samples taken from the Coast Range Ophiolite Microbial Observatory (CROMO), a subsurface observatory consisting of 12 wells drilled into the ultramafic and serpentinite mélange of the Coast Range Ophiolite in California. Using a combination of DNA and RNA sequence data and mass spectrometry data, we found evidence for several carbon fixation and assimilation strategies, including the Calvin-Benson-Bassham cycle, the reverse tricarboxylic acid cycle, the reductive acetyl coenzyme A (acetyl-CoA) pathway, and methylotrophy, in the microbial communities inhabiting the serpentinite-hosted aquifer. Our data also suggest that the microbial inhabitants of CROMO use products of the serpentinization process, including methane and formate, as carbon sources in a hyperalkaline environment where dissolved inorganic carbon is unavailable.We thank McLaughlin Reserve, in particular Paul Aigner and Cathy Koehler, for hosting sampling at CROMO and providing access to the wells, A. Daniel Jones and Anthony Schilmiller for their advice regarding metabolite extraction and mass spectrometry, Elizabeth Kujawinski for her guidance in metabolomics data analysis and interpretation, and Julia McGonigle, Christopher Thornton, and Katrina Twing for assistance with metagenomic and computational analyses

Tropical Cyclones in the 7-km NASA Global Nature Run for Use in Observing System Simulation Experiments

The National Aeronautics and Space Administration (NASA) Nature Run (NR), released for use in Observing System Simulation Experiments (OSSEs), is a 2-year long global non-hydrostatic free-running simulation at a horizontal resolution of 7 km, forced by observed sea-surface temperatures (SSTs) and sea ice, and inclusive of interactive aerosols and trace gases. This article evaluates the NR with respect to tropical cyclone (TC) activity. It is emphasized that to serve as a NR, a long-term simulation must be able to produce realistic TCs, which arise out of realistic large-scale forcings. The presence in the NR of the realistic, relevant dynamical features over the African Monsoon region and the tropical Atlantic is confirmed, along with realistic African Easterly Wave activity. The NR Atlantic TC seasons, produced with 2005 and 2006 SSTs, show interannual variability consistent with observations, with much stronger activity in 2005. An investigation of TC activity over all the other basins (eastern and western North Pacific, North and South Indian Ocean, and Australian region), together with relevant elements of the atmospheric circulation, such as, for example, the Somali Jet and westerly bursts, reveals that the model captures the fundamental aspects of TC seasons in every basin, producing realistic number of TCs with realistic tracks, life spans and structures. This confirms that the NASA NR is a very suitable tool for OSSEs targeting TCs and represents an improvement with respect to previous long simulations that have served the global atmospheric OSSE community

The Diurnal Cycle of Precipitation and Organized Convection in a Set of Global Mesoscale Simulations with the NASA GEOS AGCM

The NASA Global Modeling and Assimilation Office (GMAO) has conducted a series of 40-day nonhydrostatic global simulations with horizontal grid spacing ranging from 200 km to 3 km, as part of the DYAMOND model intercomparison project. The Goddard Earth Observing System (GEOS) model was run with the Grell-Freitas scale-aware convection scheme, which smoothly reduces parameterized deep convection with increasing resolution. Here we evaluate the diurnal cycle and other statistics of precipitation and organized convection as a function of resolution. For validation we use the 0.1 degree IMERG precipitation and 4 km Merged IR brightness temperature datasets, focusing on four regions: the continental United States, Amazonia, the equatorial Indian ocean, and the Maritime Continent. Early results indicate good phase agreement but excessive magnitude of the continental diurnal cycle of precipitation at coarser resolutions, with improved magnitude as resolution increases and the role of parameterization is reduced. Convective cloud clusters are identified with a brightness temperature threshold, and we find realistic numbers of the largest clusters (>10^4 km sq) at all resolutions, while the number of smaller clusters increases with resolution, approaching observations when dx=3 km. The observed diurnal cycle in the cluster size distribution is also reproduced, with realistic magnitude in the highest resolution runs. Precipitation characteristics across cluster sizes are also examined. The results show the potential for global mesoscale simulations as a community science resource, and we invite collaboration to explore these runs in greater detail