The optical module of the Baikal deep underwater neutrino telescope

A deep underwater Cherenkov telescope has been operating since 1993 in stages of growing size at 1.1 km depth in Lake Baikal. The key component of the telescope is the Optical Module (OM) which houses the highly sensitive phototube QUASAR-370. We describe design and parameters of the QUASAR-370, the layout of the optical module, the front-end electronics and the calibration procedures, and present selected results from the five-year operation underwater. Also, future developments with respect to a telescope consisting from several thousand OMs are discussed.Comment: 30 pages, 24 figure

Genetic-based signatures of the latitudinal differences in chronotype

The natural cycles of night and day, and their length, remain stable in near-equatorial African regions but they vary with latitude and season in Eurasia. This new environmental factor might shape the adaptation of circadian rhythms of Eurasians after the out-of-African dispersal of their African ancestors. To identify the genetic-based signatures of this adaptation, geographic variation in allele frequencies of more than 2300 genetic variants was analyzed using data from 5 African and 11 Eurasian populations of the 1000 Genomes Project. The genetic signatures of latitude-dependent polygenic selection were found more frequently within non-coding DNA regions associated with morningness–eveningness in genome-wide association studies (GWASs) than among polymorphisms hinted by GWASs of other traits/diseases and among polymorphisms sampled from pseudogenes and from protein-coding regions in either circadian clock genes or reference genes. Some of such variants were located within the introgressions of the Neanderthal’s genome into the genomes of Eurasians. © 2018 Informa UK Limited, trading as Taylor & Francis Grou

Genetic-based signatures of the latitudinal differences in chronotype

The natural cycles of night and day, and their length, remain stable in near-equatorial African regions but they vary with latitude and season in Eurasia. This new environmental factor might shape the adaptation of circadian rhythms of Eurasians after the out-of-African dispersal of their African ancestors. To identify the genetic-based signatures of this adaptation, geographic variation in allele frequencies of more than 2300 genetic variants was analyzed using data from 5 African and 11 Eurasian populations of the 1000 Genomes Project. The genetic signatures of latitude-dependent polygenic selection were found more frequently within non-coding DNA regions associated with morningness–eveningness in genome-wide association studies (GWASs) than among polymorphisms hinted by GWASs of other traits/diseases and among polymorphisms sampled from pseudogenes and from protein-coding regions in either circadian clock genes or reference genes. Some of such variants were located within the introgressions of the Neanderthal’s genome into the genomes of Eurasians. © 2018 Informa UK Limited, trading as Taylor & Francis Grou

Association of obesity in shift workers with the minor allele of a single-nucleotide polymorphism (rs4851377) in the largest circadian clock gene (NPAS2)

A growing body of evidence has hinted at the involvement of the largest gene of the circadian clock family, NPAS2, in the regulatory mechanisms underlying the link between metabolic diseases and circadian rhythm disruption. We tested whether one of single-nucleotide polymorphisms in NPAS2 (rs4851377) is associated with obesity and alternations of sleep times in 126 male rotational shift workers (bus drivers). We confirmed positive association of Body Mass Index (BMI) with the difference between free and working days in sleep times, but this difference was smaller in the homozygotes for the minor allele. Moreover, BMI above 30 (obesity) was revealed in the majority of these homozygotes and in the minority of homozygotes for the major allele (11 of 21 or 52.4% and 3 of 40 or 7.5%, respectively). Further studies are required to replicate these results and to elucidate the mechanisms linking NPAS2ʹpolymorphism in with obesity in shift workers. © 2018, © 2018 Informa UK Limited, trading as Taylor & Francis Group

A six-factor structure of individual variation in the tendencies to become sleepy and to sleep at different times of the day

A multidimensional approach has been previously applied for modeling and assessment of individual differences in the ability to sleep or to stay awake at certain clock hours. More recently the 19 time-point Visuo-verbal Judgment Task (VJT) has been proposed to predict changes in sleepiness level from the morning hours to the next day afternoon. The dimensionality of the VJT has not been explored so far. We applied a structural model of individual variation in sleep-wake behavior and habits for explaining the pattern of relationship between the VJT's dimensions yielded by rotation of principal components with eigenvalue>1. The responses to 19 items of the VJT, 72 items of 6-scale Sleep Wake Pattern Assessment Questionnaire (SWPAQ) and 60 items of 6-scale Sleep-Wake Adaptability Test (SWAT) were collected from 1037 survey participants. Factor analyses yielded 4 factorial dimensions of morning (08:00–11:00), daytime (12:00–20:00), nighttime (21:00–04:00), and after 24 h sleepiness (06:00–12:00 next day). The model was found to be capable to explain the correlations among 4 constructs of the VJT as well as the correlations among previously developed scales of the SWPAQ and SWAT. The results confirmed the predictive power of the model and its applicability for multidimensional assessments in chronobiological and chronopsychological studies. © 202

Linking stages of non-rapid eye movement sleep to the spectral EEG markers of the drives for sleep and wake

The conventional staging classification reduces all patterns of sleep polysomnogram signals to a small number of yes-or-no variables labeled wake or a stage of sleep (e.g., W, N1, N2, N3, and R for wake, the first, second, and third stages of non-rapid eye movement sleep and rapid eye movement sleep, respectively). However, the neurobiological underpinnings of such stages remained to be elucidated. We tried to evaluate their link to scores on the first and second principal components of the EEG spectrum (1PCS and 2PCS), the markers of two major groups of promoters/inhibitors of sleep/wakefulness delineated as the drives for sleep and wake, respectively. On two occasions, polysomnographic records were obtained from 69 university students during 50-min afternoon naps and 30-s stage epochs were assigned to 1PCS and 2PCS. Results suggested two dimensionality of the structure of individual differences in amounts of stages. Amount of N1 loaded exclusively on one of two dimensions associated with 1PCS, amounts of W and N2 loaded exclusively on another dimension associated with 2PCS, and amount of N3 was equally loaded on both dimensions. Scores demonstrated stability within each stage, but a drastic change in just one of two scores occurred during transitions from one stage to another on the way from wakefulness to deeper sleep (e.g., 2PCS changed from >0 to 0 during transition N1!N2). Therefore, the transitions between stages observed during short naps might be linked to rapid changes in the reciprocal interactions between the promoters/inhibitors of sleep/wakefulness. NEW & NOTEWORTHY In the present nap study, two dimensionality of the structure of individual differences in sleep stages was revealed. These results also suggested that individual variation in the sleep and wake drives associated with the first and second principal components of the EEG spectrum might underlie this structure. It seemed that each stage might be related to a certain, stage-specific combination of wake-sleep promoting/inhibiting influences associated with these drives for sleep and wake. 0022-3077/21 Copyright © 2021 the American Physiological Society

Napping between scylla and charybdis of N1 and N3: latency to N2 in a brief afternoon nap can be reduced by binaural beating

Afternoon nap is regarded as a potent behavioral strategy minimizing sleepiness and fatigue. The benefits of afternoon naps require the accumulation of, at least, 3 min of stage 2 sleep. However, there are practical disadvantages of nap longer than 10–15 min, such as greater length of time consumed by the nap, appearance of slow wave sleep causing greater sleep inertia right after the nap, and possible detrimental impact of such nap on subsequent nocturnal sleep. We previously found that a binaural beat treatment that is a dichotic presentation of two almost equivalent pure tones with slightly different frequencies led to a reduction of latency to stage 2 sleep. To replicate this result and to examine whether such reduction leads, in turn, to the earlier appearance of slow wave sleep, we asked 23 and 21 healthy volunteers to nap in the afternoon for 30 and 20 min, respectively. Almost half of volunteers showed latency to stage 2 longer than 17 min, but most of them responded to the treatment by its reduction. The following occurrence of slow wave sleep reduced level of alertness self-assessed right after the nap. We concluded that latency to stage 2 sleep might be experimentally challenged by binaural beating. © 2019, © 2019 Informa UK Limited, trading as Taylor & Francis Group