Depredation Patterns of Northern Bobwhite Nest Predators in Virginia

Little information exists that can be used to accurately identify predator species responsible for destruction of northern bobwhite (Colinus virginianus) nests. We used remotely-tripped cameras to photograph nest predators at 25 wild bobwhite nests that were continually filled with eggs from pen-raised quail. Data describing depredation events were collected to characterize species-specific damage patterns. Seven species of nest predators were photographed 1,797 times from June to October 1996. We describe depredation patterns for opossums (Didelphis marsupialis), striped skunks (Mephitis mephitis), raccoons (Procyon lotor), gray fox (Urocyon cinereoargenteus), and domestic dogs (Canis familiaris). These descriptions should help researchers identify the predator species responsible for destroyed bobwhite nests

Breeding Season Movements and Dispersal of Northern Bobwhites in Fragmented Habitats of Virginia

To better understand dispersal patterns of northern bobwhites (Colinus virginianus) in fragmented habitats, we measured breeding season movements of 198 radiomarked bobwhites in central and eastern Virginia during 1994–1996. Mean distance between arithmetic centers of winter (1 Feb–15 Apr) and early breeding season (16 Apr–30 Jun) activity areas was 1,194 +- 137 m. Distance between centers of winter and late breeding season (1 Jul–15 Sep) activity areas averaged 1,644 +- 209 m and was greater for juveniles than adults (P = 0.04). Maximum distances moved between winter and breeding season locations (early, late, and combined) was also greater for juveniles than adults (P \u3c= 0.05). Forty-nine of 198 (25%) bobwhites dispersed more than 2 km. A greater proportion of juveniles (28%) than adults (10%) dispersed \u3e 2 km. Juvenile males were more likely to disperse than any other sex/age group (P = 0.02). Adult males were least likely to disperse (P \u3c 0.01). We suggest that breeding season movements of bobwhites may be greater in fragmented landscapes than in areas with large blocks of suitable habitat. We recommend that researchers utilize dispersal information to help define the spatial distribution of habitat patches necessary to perpetuate bobwhite populations at a regional level

Evaluating Temporal Differences in Land Cover: Implications for Managing Bobwhite at the Landscape Scale in Virginia

Northern bobwhite (Colinus virginianus) populations have declined substantially across large portions of their range. A number of factors may be contributing to that decline including disease, predation, pesticides, and habitat loss. Of these, habitat loss has emerged as the primary factor. Habitat loss has occurred at large and small scales. It is relatively easy to evaluate bobwhite habitat at the micro scale, but evaluating habitat change at the landscape scale is difficult. The goal of this pilot study was to evaluate a novel technique using aerial imagery and line transects to evaluate both contemporary and historic landscapes effectively, quantifying the differences observed to describe what changes, if any, occurred through time. Contemporary photos were available through the 2013 Virginia Base Mapping Program. Historic photos were obtained via United States Geological Survey (1967 – 1969). Two Virginia Quail recovery Initiative focal counties were chosen for the study, Halifax (south central Piedmont) and Sussex (southeastern Coastal Plain). A 12-class habitat categorization system was developed to use in analysis. We developed a technique that allowed photo interpreters to identify and delineate features at a large scale (\u3e 1:6000) over a wide geographic area. Thirty-five to forty transects were evaluated for each site (n = 7). Favorable habitat decline observed ranged from -2% to -49%. Favorable edge decreased through time in four of five sites in Halifax County. Favorable edge increased dramatically within both Sussex County sites, particularly in the bobwhite focal area. Overall, habitat appears to have improved in Sussex County, and declined significantly in Halifax County. Habitats differed both through time and across the landscape. The largest habitat change noted was conversion from field to forest, predominantly pine. We feel this landscape scale habitat analysis technique holds much promise across the bobwhite’s range

Effects of Filter Strips on Habitat Use and Home Range of Northern Bobwhites on Alligator River National Wildlife Refuge

Lack of breeding habitat for northern bobwhites (Colinus virginianus) on agricultural landscapes is a factor that limits populations. Therefore, we examined how the addition of filter strips around crop fields and along crop field drainage ditches impacted northern bobwhites. Our study focused on habitat use, home range and brood-rearing range of bobwhites, from April through September I 993-94. Two farms on Alligator River National Wildlife Refuge were sub-divided into filter strip (FS) and non-filter strip (NFS) sections. More bobwhites were found on FS sections than on NFS sections based on flush counts (4.3x more on FS areas: P = 0.02). We used log-linear analysis to examine the distribution of telemetry locations (n = 1796) of radio-marked bobwhites (n = 218) across 5, 4.6m bands parallel to drainage ditches. Bobwhite locations were skewed towards ditches, particularly on FS sections before soybeans matured to a size that was sufficient to provide canopy cover for bobwhites. Bobwhites captured on FS sections had significantly smaller breeding season ranges than those captured on NFS sections (P = 0.001). Adult and sub-adult breeding season (May-Aug) ranges (n = 23) averaged 32 ha (SE = 26) and 182 ha (SE = 41) on FS and NFS sections, respectively. Brood ranges to 14 days (n = 9) ranged from 0.8 ha to 2.2 ha depending on habitat and calculation method. Presence of filter strips shifted habitat use patterns, especially during spring and early summer, and improved crop fields as habitat for breeding bobwhites

Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.

Dipeptidyl-peptidase VI from Bacillus sphaericus and YkfC from Bacillus subtilis have both previously been characterized as highly specific γ-D-glutamyl-L-diamino acid endopeptidases. The crystal structure of a YkfC ortholog from Bacillus cereus (BcYkfC) at 1.8 Å resolution revealed that it contains two N-terminal bacterial SH3 (SH3b) domains in addition to the C-terminal catalytic NlpC/P60 domain that is ubiquitous in the very large family of cell-wall-related cysteine peptidases. A bound reaction product (L-Ala-γ-D-Glu) enabled the identification of conserved sequence and structural signatures for recognition of L-Ala and γ-D-Glu and, therefore, provides a clear framework for understanding the substrate specificity observed in dipeptidyl-peptidase VI, YkfC and other NlpC/P60 domains in general. The first SH3b domain plays an important role in defining substrate specificity by contributing to the formation of the active site, such that only murein peptides with a free N-terminal alanine are allowed. A conserved tyrosine in the SH3b domain of the YkfC subfamily is correlated with the presence of a conserved acidic residue in the NlpC/P60 domain and both residues interact with the free amine group of the alanine. This structural feature allows the definition of a subfamily of NlpC/P60 enzymes with the same N-terminal substrate requirements, including a previously characterized cyanobacterial L-alanine-γ-D-glutamate endopeptidase that contains the two key components (an NlpC/P60 domain attached to an SH3b domain) for assembly of a YkfC-like active site

The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.

Proteins that contain the DUF2874 domain constitute a new Pfam family PF11396. Members of this family have predominantly been identified in microbes found in the human gut and oral cavity. The crystal structure of one member of this family, BVU2987 from Bacteroides vulgatus, has been determined, revealing a β-lactamase inhibitor protein-like structure with a tandem repeat of domains. Sequence analysis and structural comparisons reveal that BVU2987 and other DUF2874 proteins are related to β-lactamase inhibitor protein, PepSY and SmpA_OmlA proteins and hence are likely to function as inhibitory proteins

Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger

The first structures from the FmdE Pfam family (PF02663) reveal that some members of this family form tightly intertwined dimers consisting of two domains (N-terminal α+β core and C-terminal zinc-finger domains), whereas others contain only the core domain. The presence of the zinc-finger domain suggests that some members of this family may perform functions associated with transcriptional regulation, protein–protein interaction, RNA binding or metal-ion sensing

Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules

The crystal structure of BT_3984, a SusD-family protein, reveals a TPR N-terminal region providing support for a loop-rich C-terminal subdomain and suggests possible interfaces involved in sus complex formation

Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron

The crystal structure of a novel MACPF protein, which may play a role in the adaptation of commensal bacteria to host environments in the human gut, was determined and analyzed

Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism

The crystal structure of BT2081 from B. thetaiotaomicron reveals a two-domain protein with a putative carbohydrate-binding site in the C-­terminal domain