SRSF1 modulates the organization of splicing factors in nuclear speckles and regulates transcription

The mammalian cell nucleus is compartmentalized into non-membranous subnuclear domains that regulate key nuclear functions. Nuclear speckles are subnuclear domains that contain pre-mRNA processing factors and non-coding RNAs. Many of the nuclear speckle constituents work in concert to coordinate multiple steps of gene expression, including transcription, pre-mRNA processing and mRNA transport. The mechanism that regulates the formation and maintenance of nuclear speckles in the interphase nucleus is poorly understood. In the present study, we provide evidence for the involvement of nuclear speckle resident proteins and RNA components in the organization of nuclear speckles. SR-family splicing factors and their binding partner, long non-coding MALAT1 RNA, can nucleate the assembly of nuclear speckles in the interphase nucleus. Depletion of SRSF1 in human cells compromises the association of splicing factors to nuclear speckles and influences the levels and activity of other SR proteins. Furthermore, on a stably integrated reporter gene locus, we demonstrate the role for SRSF1 in RNA polymerase II-mediated transcription. Our results suggest that SR proteins mediate the assembly of nuclear speckles and regulate gene expression by influencing both transcriptional and posttranscriptional activities within the cell nucleus

A multi-dimensional approach from seed-to-seed to understand and improve heat stress tolerance in rice

In changing climatic conditions, stress caused by high temperature poses a serious threat to rice cultivation. Physiological, biochemical, and molecular analysis of rice cultivars revealed that Nagina22 (N22) shows lesser reduction in chlorophyll content, net photosynthetic rate, spikelet fertility and grain yield, but increased membrane thermal stability, antioxidant enzymes activity and transpiration rate (E) at high temperature. DREB, RAB, LEA, and genes associated with hormones signalling were induced during germination, while OsFd (an iron sulphur cluster binding protein) and CWIP (cell wall integrity protein) emerged as high priority candidate genes in seedling and reproductive stages. Their function is being analysed by transgene expression and CRISPR/Cas genome editing approaches. Field screening in polyhouse, late sowing and temperature gradient chamber for 20 morpho-physiological traits indicated the importance of both yield and spikelet fertility, and photosynthesis traits. N22 showed the least Heat Susceptibility Index (HSI) for yield/plant, spikelet fertility, flag leaf SPAD and stomatal conductance, while Vandana showed the highest HSI for spikelet fertility and flag leaf temperature. QTLs for HSI of spikelet fertility were identified on chromosome 1 and HSI of yield per plant on chromosomes 1, 2, 3, 4, 7 and 8; and PV of 6% to 57% using 174 F2-3 Vandana x N22 mapping population. Simultaneously, RNAseq was performed to identify the genome wide miRNAs and transcriptome of N22 and Vandana from shoot and root after short and long duration of heat stress treatments; and recovery phase for an eQTL-guided function-related co-expression analysis to identify the putative regulators and gene regulatory networks

Deep sequencing of small RNAs reveals ribosomal origin of microRNAs in Oryza sativa and their regulatory role in high temperature

MicroRNAs are small noncoding regulatory RNAs which control gene expression by mRNA degradation or translational repression. They are significant molecular players regulating important biological processes such as developmental timing and stress response. We report here the discovery of miRNAs derived from ribosomal DNA using the small RNA datasets of 16 deep sequencing libraries of rice. Twelve putative miRNAs were identified based on highly stringent criteria of novel miRNA prediction. Surprisingly, 10 putative miRNAs (mi_7403, mi_8435, mi_12675, mi_4266, mi_4758, mi_4218, mi_8200, mi_4644, mi_14291, mi_16235) originated from rDNA of rice chromosome 9. Expression analysis of putative miRNAs and their target genes in heat tolerant and susceptible rice cultivars in control and high temperature treated seedlings revealed differential regulation of rDNA derived miRNAs. This is the first report of rDNA derived miRNAs in rice which indicates their role in gene regulation during high temperature stress in plants. Further studies in this area will open new research challenges and opportunities to broaden our knowledge on gene regulation mechanisms

Observation of D0→ρ0γD^0\to \rho^0\gamma and search for CPCP violation in radiative charm decays

We report the first observation of the radiative charm decay $D^0 \to \rho^0 \gamma$ and the first search for $CP$ violation in decays $D^0 \to \rho^0 \gamma$, $\phi\gamma$, and $\overline{K}{}^{*0} \gamma$, using a data sample of 943 fb$^{-1}$ collected with the Belle detector at the KEKB asymmetric-energy $e^+e^-$ collider. The branching fraction is measured to be $\mathcal{B}(D^0 \to \rho^0 \gamma)=(1.77 \pm 0.30 \pm 0.07) \times 10^{-5}$, where the first uncertainty is statistical and the second is systematic. The obtained $CP$ asymmetries, $\mathcal{A}_{CP}(D^0 \to \rho^0 \gamma)=+0.056 \pm 0.152 \pm 0.006$, $\mathcal{A}_{CP}(D^0 \to \phi \gamma)=-0.094 \pm 0.066 \pm 0.001$, and $\mathcal{A}_{CP}(D^0 \to \overline{K}{}^{*0} \gamma)=-0.003 \pm 0.020 \pm 0.000$, are consistent with no $CP$ violation. We also present an improved measurement of the branching fractions $\mathcal{B}(D^0 \to \phi \gamma)=(2.76 \pm 0.19 \pm 0.10) \times 10^{-5}$ and $\mathcal{B}(D^0 \to \overline{K}{}^{*0} \gamma)=(4.66 \pm 0.21 \pm 0.21) \times 10^{-4}$

Genotypic and Phenotypic Variation in the Global Collection of Chickpea (Cicer arietinum L.)

Worldwide chickpea is the 4rth largest grain-legume crop – area 11.2 million ha, production 9.2 million tons, and productivity 0.82 t ha-1 (FAO 2005). Chickpea is grown in 40 countries (area exceeding 10,000 ha in each country). Chickpea productivity consistently increased in India and Mexico while it declined in many other countries. Two types of chickpeas – desi – widely grown in South Asia and Africa and Kabuli – widely grown in Mediterranean region are known. Large variation in chickpea germplasm has been noted for most of the morphological/agronomic traits and for resistance to biotic and abiotic stresses. However, careful assessment of genetic resources is a key to enhance utilization of genetically diverse accessions with beneficial traits in breeding programs.......

Cinnamon as a Potential Feed Additive: Beneficial Effects on Poultry Health and Production Performances – An Update

According to the Food and Agricultural Organization, global poultry output increased from approximately 115 million tons in 2016 to around 136 million tons in 2023. Poultry production has increased significantly with the dramatic uptick in meat and egg demand. Feed accounts for between 65 and 70 percent of total production costs, making it the largest chicken industry expense. This is why it's important to maximize the transformation of poultry feed into feed with a high biological value while taking as many steps as possible to protect feed quality and reduce feed costs. The use of feed additives in poultry feed has recently gained popularity and has been essential to increase feed efficiency and growth rate, which typically leads to reduced costs. The meat's texture, consistency, and nutritional content are all improved, and its shelf life is lengthened as a bonus. Feed additives are a fantastic tool for boosting a poultry farm's bottom line. For example, cinnamon (Cinnamomum verum) is often used as a traditional feed supplement. Rather than antibiotics, the poultry industry could benefit from using cinnamon as a natural antibiotic replacement, which would benefit animal welfare, consumer health, and the bottom line. The performance index, feed intake, FCE performance, and weight growth of poultry can all be improved by including cinnamon in the feed at varied concentrations. The digestive health and intestinal microbial population of hens are enhanced by a diet containing bioactive components of cinnamon. Cinnamon essential oils' popularity stems from their many valuable features, such as their ability to increase gastric enzyme synthesis and other biofunctional benefits. This review focuses on the possible advantages of cinnamon as a natural feed supplement for chickens, particularly about their intestinal microbiota, blood chemistry, nutrient absorption, gene expression, and immunology

Evidence for Isospin Violation and Measurement of CPCP Asymmetries in B→K∗(892)γB \to K^{\ast}(892) \gamma

We report the first evidence for isospin violation in $B \to K^* \gamma$ and the first measurement of difference of $CP$ asymmetries between $B^+ \to K^{*+} \gamma$ and $B^0 \to K^{*0} \gamma$. This analysis is based on the data sample containing $772 \times 10^6 B\bar{B}$ pairs that was collected with the Belle detector at the KEKB energy-asymmetric $e^+ e^-$ collider. We find evidence for the isospin violation with a significance of 3.1$\sigma$, $\Delta_{0+} = (+6.2 \pm 1.5 ({\rm stat.}) \pm 0.6 ({\rm syst.}) \pm 1.2 (f_{+-}/f_{00}))$\%, where the third uncertainty is due to the uncertainty on the fraction of $B^+B^-$ to $B^0\bar{B}^0$ production in $\Upsilon(4S)$ decays. The measured value is consistent with predictions of the SM. The result for the difference of $CP$ asymmetries is $\Delta A_{CP} = (+2.4 \pm 2.8({\rm stat.}) \pm 0.5({\rm syst.}))$\%, consistent with zero. The measured branching fractions and $CP$ asymmetries for charged and neutral $B$ meson decays are the most precise to date. We also calculate the ratio of branching fractions of $B^0 \to K^{*0} \gamma$ to $B_s^0 \to \phi \gamma$.Comment: 11 pages, 7 figures. shown at FPCP2017. accepted by PR

Search for CPCP violation in the D+→π+π0D^{+}\to\pi^{+}\pi^{0} decay at Belle

We search for $CP$ violation in the charged charm meson decay $D^{+}\to\pi^{+}\pi^{0}$, based on a data sample corresponding to an integrated luminosity of $\rm 921~fb^{-1}$ collected by the Belle experiment at the KEKB $e^{+}e^{-}$ asymmetric-energy collider. The measured $CP$ violating asymmetry is $[+2.31\pm1.24({\rm stat})\pm0.23({\rm syst})]\%$, which is consistent with the standard model prediction and has a significantly improved precision compared to previous results.Comment: 8 pages, 3 figure

Allelic Richness and Diversity in Global Composite Collection and Reference Sets in Chickpea (Cicer Arietinum L.).

Chickpea is the fourth largest grain legume crop globally. A composite collection of 3000 accessions was formed and genotyped using 50 SSR markers. The accessions were also field evaluated for seven qualitative traits. Analysis of 48 SSR markers data on 2915 accessions detected 1683 alleles, of which 935 were rare and 748 common. Gene diversity varied from 0.533 to 0.975. Kabuli chickpea as a group were genetically more diverse than other seed types. Several group-specific unique alleles were detected: 104 in Kabuli, 297 in desi, and 69 in wild Cicer; 114 each in West Asia and Mediterranean, 117 in South and South East Asia, and 10 in African region accessions. A genotype-based reference set captured 1315 alleles compared to 1237 alleles in the reference set based on qualitative traits or 1354 alleles based on SSRs and qualitative traits data. The relative usefulness of these reference sets in chickpea breeding and genomics studies are being further investigated