Dynamical heterogeneities in a two dimensional driven glassy model: current fluctuations and finite size effects

In this article, we demonstrate that in a transport model of particles with kinetic constraints, long-lived spatial structures are responsible for the blocking dynamics and the decrease of the current at strong driving field. Coexistence between mobile and blocked regions can be anticipated by a first-order transition in the large deviation function for the current. By a study of the system under confinement, we are able to study finite-size effects and extract a typical length between mobile regions

Injected Power Fluctuations in 1D dissipative systems : role of ballistic transport

This paper is a generalization of the models considered in [J. Stat. Phys. 128,1365 (2007)]. Using an analogy with free fermions, we compute exactly the large deviation function (ldf) of the energy injected up to time $t$ in a one-dimensional dissipative system of classical spins, where a drift is allowed. The dynamics are T=0 asymmetric Glauber dynamics driven out of rest by an injection mechanism, namely a Poissonian flipping of one spin. The drift induces anisotropy in the system, making the model more comparable to experimental systems with dissipative structures. We discuss the physical content of the results, specifically the influence of the rate of the Poisson injection process and the magnitude of the drift on the properties of the ldf. We also compare the results of this spin model to simple phenomenological models of energy injection (Poisson or Bernoulli processes of domain wall injection). We show that many qualitative results of the spin model can be understood within this simplified framework.Comment: 23 pages, 8 figure

Activity statistics in a colloidal glass former: experimental evidence for a dynamical transition

In a dense colloidal suspension at a volume fraction slightly lower than that of its glass transition, we follow the trajectories of an assembly of tracers over a large time window. We define a local activity, which quantifies the local tendency of the system to rearrange. We determine the statistics of the time and space integrated activity, and we argue that it develops a low activity tail that comes on a par with the onset of glassy behavior and heterogeneous dynamics. These rare events may be interpreted as the reflection of an underlying dynamic phase transition.Comment: 20 pages, 16 figure

Role of cilia activity and surrounding viscous fluid on properties of metachronal waves

Large groups of active cilia collectively beat in a fluid medium as metachronal waves, essential for some microorganisms motility and for flow generation in mucociliary clearance. Several models can predict the emergence of metachronal waves, but what controls the properties of metachronal waves is still unclear. Here, we investigate numerically a simple model for cilia in the presence of noise on regular lattices in one- and two-dimensions. We characterize the wave using spatial correlation and the frequency of collective beating. Our results clearly show that the viscosity of the fluid medium does not affect the wavelength; the activity of the cilia does. These numerical results are supported by a dimensional analysis, which is expected to be robust against the model for active force generation, unless surrounding fluid influences the cilia activity. Interestingly, enhancement of cilia activity increases the wavelength and decreases the beating frequency, keeping the wave velocity almost unchanged. These results might have significance in understanding paramecium locomotion and mucociliary clearance diseases.Comment: 6 pages, 5 figure

Glassy behavior of a homopolymer from molecular dynamics simulations

We study at- and out-of-equilibrium dynamics of a single homopolymer chain at low temperature using molecular dynamics simulations. The main quantities of interest are the average root mean square displacement of the monomers below the theta point, and the structure factor, as a function of time. The observation of these quantities show a close resemblance to those measured in structural glasses and suggest that the polymer chain in its low temperature phase is in a glassy phase, with its dynamics dominated by traps. In equilibrium, at low temperature, we observe the trapping of the monomers and a slowing down of the overall motion of the polymer as well as non-exponential relaxation of the structure factor. In out-of-equilibrium, at low temperatures, we compute the two-time quantities and observe breaking of ergodicity in a range of waiting times, with the onset of aging.Comment: 11 pages, 4 figure

Transport on a Lattice with Dynamical Defects

Many transport processes in nature take place on substrates, often considered as unidimensional lanes. These unidimensional substrates are typically non-static: affected by a fluctuating environment, they can undergo conformational changes. This is particularly true in biological cells, where the state of the substrate is often coupled to the active motion of macromolecular complexes, such as motor proteins on microtubules or ribosomes on mRNAs, causing new interesting phenomena. Inspired by biological processes such as protein synthesis by ribosomes and motor protein transport, we introduce the concept of localized dynamical sites coupled to a driven lattice gas dynamics. We investigate the phenomenology of transport in the presence of dynamical defects and find a novel regime characterized by an intermittent current and subject to severe finite-size effects. Our results demonstrate the impact of the regulatory role of the dynamical defects in transport, not only in biology but also in more general contexts

Driving kinetically constrained models into non-equilibrium steady states:Structural and slow transport properties

Complex fluids in shear flow and biased dynamics in crowded environments exhibit counterintuitive features which are difficult to address both at theoretical level and by molecular dynamic simulations. To understand some of these features we study a schematic model of highly viscous liquid, the 2D Kob-Andersen kinetically constrained model, driven into non-equilibrium steady states by a uniform non-Hamiltonian force. We present a detailed numerical analysis of the microscopic behavior of the model, including transversal and longitudinal spatial correlations and dynamic heterogeneities. In particular, we show that at high particle density the transition from positive to negative resistance regimes in the current vs field relation can be explained via the emergence of nontrivial structures that intermittently trap the particles and slow down the dynamics. We relate such spatial structures to the current vs field relation in the different transport regimes