Additional file 6: Table S5. of Zipper plot: visualizing transcriptional activity of genomic regions

Cancer type and barcode for each sample from TCGA. (XLS 138 kb

Additional file 1: Methods. of Zipper plot: visualizing transcriptional activity of genomic regions

(PDF 1792 kb

Additional file 4: Table S3. of Zipper plot: visualizing transcriptional activity of genomic regions

Correspondence between Roadmap Epigenomics names and actual sample types; number of peaks and number of epigenomes available for each case; peak width and peak enrichment distributions across chromosomes for narrow, broad and gapped peaks (for each mark). (XLS 109 kb

Additional file 5: Table S4. of Zipper plot: visualizing transcriptional activity of genomic regions

Correspondence between FANTOM5 names and actual sample types; number of CAGE-seq peaks per chromosome; peak width and tpm distributions across chromosomes. (XLS 101 kb

Karyoview, showing a karyogram of a patient with a complex trisomy 21.

<p>Karyoview, showing a karyogram of a patient with a complex trisomy 21.</p

Chromosome view, a patient with a complex trisomy 21.

<p>(top) sequencing data based coverage and clustering information (bottom) genomic microarray profile. Aberrant clusters are depicted as red arches. Horizontal segments delineate coverage windows in case of sequencing data or microarray probes in case of genomic-microarray/arrayCGH data, segment can be colored in blue when indicating a gain or red for a loss. Below the ratio, cluster plot of the samples, 2 chromosome arms are draw with segmental duplications shown between them. The lower part contains the annotation tracks.</p

Heatmap, plotting copy number variants for two sequencing and two genomic microarray based experiments.

<p>Heatmap, plotting copy number variants for two sequencing and two genomic microarray based experiments.</p

Report.

<p>View an overview of all experiments for a case/patient with a complex trisomy 21.</p