33 research outputs found

    iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources

    Get PDF
    The advancement of the computational biology field hinges on progress in three fundamental directions – the development of new computational algorithms, the availability of informatics resource management infrastructures and the capability of tools to interoperate and synergize. There is an explosion in algorithms and tools for computational biology, which makes it difficult for biologists to find, compare and integrate such resources. We describe a new infrastructure, iTools, for managing the query, traversal and comparison of diverse computational biology resources. Specifically, iTools stores information about three types of resources–data, software tools and web-services. The iTools design, implementation and resource meta - data content reflect the broad research, computational, applied and scientific expertise available at the seven National Centers for Biomedical Computing. iTools provides a system for classification, categorization and integration of different computational biology resources across space-and-time scales, biomedical problems, computational infrastructures and mathematical foundations. A large number of resources are already iTools-accessible to the community and this infrastructure is rapidly growing. iTools includes human and machine interfaces to its resource meta-data repository. Investigators or computer programs may utilize these interfaces to search, compare, expand, revise and mine meta-data descriptions of existent computational biology resources. We propose two ways to browse and display the iTools dynamic collection of resources. The first one is based on an ontology of computational biology resources, and the second one is derived from hyperbolic projections of manifolds or complex structures onto planar discs. iTools is an open source project both in terms of the source code development as well as its meta-data content. iTools employs a decentralized, portable, scalable and lightweight framework for long-term resource management. We demonstrate several applications of iTools as a framework for integrated bioinformatics. iTools and the complete details about its specifications, usage and interfaces are available at the iTools web page http://iTools.ccb.ucla.edu

    Pinyon-juniper woodlands of New Mexico: A biological and economic appraisal

    No full text
    Forward; Ecology of pinyon-juniper vegetation in New Mexico; High value crops from New Mexico pinyon pines: I. Crop improvement through woodland stand management; Growth and management of pinyon; High value crops from New Mexico pinyon pines: II. Crop improvement through biotechnology; Importance of pinyon-juniper woodlands to wildlife; Summary; Appendix A - Pinyon juniper publications by the authors; Appendix B - Graduate theses on pinyon-juniper supervised by Fishery and Wildlife Department facultyReport containing a collection of pinyon research for use in the assessment of pinyon resources in New Mexico in the late 1980s

    Site characteristics on pinyon-juniper and blue grama ranges in South-Central New Mexico

    No full text
    Introduction; Review of literature; Description of area; Methods and procedures; Results; Vegetation; Soil; Discussion; Literature cited; Appendix; AcknowledgmentsBulletin containing the results of a study to determine vegetative and soil characteristics of loamy, shallow, and hill sites in the Fort Stanton Cooperative Range Research Station in southcentral New Mexico

    Ecological characteristics of walkingstick cholla

    No full text
    Introduction; Taxonomy and description; Distribution; Reproduction; Growth and phenology; Edaphic relationships; Fire responses; Biological relationships; Literature citedBulletin containing the results of a study of the ecological characteristics of walkingstick cholla with emphasis on its interference and competetive relationships with herbaceous vegetation on New Mexico ranges

    Chemical composition and digestibility of important range grass species in south-central New Mexico

    No full text
    Description of area; Procedures; Results; Phenology; Chemical composition; Summary and conclusions; Literature cited; Appendix; AcknowledgmentsBulletin describing the procedure and results of a study to determine the chemical composition of different range grasses in order to determine if common range grasses provide sufficient nutrition for cattle

    Snakeweed, problems and perspectives: proceedings, November 9- 10, 1989, Las Cruces, New Mexico

    No full text
    Ecology and management; Ecology and management of Broom Snakeweed (SP 342); Snakeweed populations in New Mexico, 1978-1989 (SP 343); Soils and site potential of Snakeweed rangeland (SP 343); Hydrology of Snakeweed dominated rangelands (SP 345); Snakeweed seed characteristics and germination requirements; Physiology of Broom Snakeweed in relation to chemical control (SP 346); Pesticide application technology (SP 347); Probability of Snakeweed die-off and invasion on rangeland (SP 348); Use of herbicides in Snakeweed management (SP 349); Use of fire in Snakeweed management (SP 350); Economics of Broom Snakeweed control (SP 351); Influence of livestock grazing on Broom Snakeweed populations (SP 352);Bulletin containing the proceedings of the symposium "Broom snakeweed: Problems and perspectives," which took place on November 9-10, 1989, in Las Cruces, New Mexico

    Burning and fertilizing blue grama range in south-central New Mexico

    No full text
    Introduction; Review of literature; Description of area; Methods and procedures; Results; Fire temperatures; Herbage production; Seedstalk and density; Below-ground mass; Soil water; Chemical properties of the soil; Discussions and conclusions; Literature cited;Bulletin containing the results of multi-year experiments to determine the effect of burn treatment and fertilization on the yield of blue grama grass in New Mexico rangelands
    corecore