ClaR—a novel key regulator of cellobiose and lactose metabolism in Lactococcus lactis IL1403

In a number of previous studies, our group has discovered an alternative pathway for lactose utilization in Lactococcus lactis that, in addition to a sugar-hydrolyzing enzyme with both P-β-glucosidase and P-β-galactosidase activity (BglS), engages chromosomally encoded components of cellobiose-specific PTS (PTSCel-Lac), including PtcA, PtcB, and CelB. In this report, we show that this system undergoes regulation via ClaR, a novel activator protein from the RpiR family of transcriptional regulators. Although RpiR proteins are widely distributed among lactic acid bacteria, their roles have yet to be confirmed by functional assays. Here, we show that ClaR activity depends on intracellular cellobiose-6-phosphate availability, while other sugars such as glucose or galactose have no influence on it. We also show that ClaR is crucial for activation of the bglS and celB expression in the presence of cellobiose, with some limited effects on ptcA and ptcB activation. Among 190 of carbon sources tested, the deletion of claR reduces L. lactis growth only in lactose- and/or cellobiose-containing media, suggesting a narrow specificity of this regulator within the context of sugar metabolism

A smelly business: microbiology of Adélie penguin guano (Point Thomas rookery, Antarctica)

Adélie penguins (Pygoscelis adeliae) are the most numerous flightless bird group breeding in coastal areas of Maritime and Continental Antarctica. Their activity leaves a mark on the land in the form of large guano deposits. This guano is an important nutrient source for terrestrial habitats of ice-free Antarctic areas, most notably by being the source of ammonia vapors which feed the surrounding grass, lichen and algae communities. Although investigated by researchers, the fate of the guano-associated microbial community and its role in decomposition processes remain vague. Therefore, by employing several direct community assessment methods combined with a broad culture-based approach we provide data on bacterial numbers, their activity and taxonomic affiliation in recently deposited and decayed Adélie penguin guano sampled at the Point Thomas rookery in Maritime Antarctica (King George Island). Our research indicates that recently deposited guano harbored mostly bacteria of penguin gut origin, presumably inactive in cold rookery settings. This material was rich in mesophilic enzymes active also at low temperatures, likely mediating early stage decomposition. Fresh guano colonization by environmental bacteria was minor, accomplished mostly by ammonia scavenging Jeotgalibaca sp. cells. Decayed guano contained 10-fold higher bacterial numbers with cold-active enzymes dominating the samples. Guano was colonized by uric-acid degrading and lipolytic Psychrobacter spp. and proteolytic Chryseobacterium sp. among others. Several spore-forming bacteria of penguin gut origin persisted in highly decomposed material, most notably uric-acid fermenting members of the Gottschalkiaceae family

Microbial community changes along the Ecology Glacier ablation zone (King George Island, Antarctica)

In recent years glacial surfaces have received much attention as microbial habitats of diverse photoautotrophic and heterotrophic cells. Supraglacial ecosystems are annually covered and uncovered by snow. The aim of this study was to investigate the microbial community response to changing environmental conditions in a transect following the receding snow line on the surface of Ecology Glacier (King George Island, Antarctica). Parameters of surface ice and cryoconite holes included chemical composition of ice and sediment, Bacteria diversity by denaturating gradient gel electrophoresis (DGGE), microbial functional diversity (Biolog Ecoplates), and microbial counts (epifluorescence microscopy, colony forming units - CFU). Data demonstrated profound differences between surface ice and cryoconite holes. Changing environmental factors along the transect influenced composition and abundance of the microbiocenosis in both habitat types. Several parameters correlated positively with distance from the glacier edge, including the cell morphotype Shannon Index, chlorophyll a, nitrogen and seston concentrations. Suspended solids content positively correlated with microbial 2 abundance and diversity. Nitrogen and phosphorus were limiting factors of microbial growth as amounts of organic nitrogen and phosphorus positively correlated with the cell numbers, fission rates and photoautotroph contribution. Our findings indicate that microbial community shows a response in terms of abundance and diversity to exposure of the glacial surface as snow-cover melts. To our knowledge this is the first study to recognize a microbial development pattern on a glacier surface in connection with the receding snow line. This may help better understand variability within supraglacial habitats, correct sampling procedures and inform biocenotic development models

Evidence of adaptation, niche separation and microevolution within the genus Polaromonas on Arctic and Antarctic glacial surfaces

Polaromonas is one of the most abundant genera found on glacier surfaces, yet it’s ecology remains poorly described. Investigations made to date point towards a uniform distribution of Polaromonas phylotypes across the globe. We compared 43 Polaromonas isolates obtained from surfaces of Arctic and Antarctic glaciers to address this issue. 16S rRNA gene sequences, intergenic transcribed spacers (ITS) and metabolic fingerprinting showed great differences between hemispheres but also between neighboring glaciers. Phylogenetic distance between Arctic and Antarctic isolates indicated separate species. The Arctic group clustered similarly, when constructing dendrograms based on 16S rRNA gene and ITS sequences, as well as metabolic traits. The Antarctic strains, although almost identical considering 16S rRNA genes, diverged into 2 groups based on the ITS sequences and metabolic traits, suggesting recent niche separation. Certain phenotypic traits pointed towardscell adaptation to specific conditions on a particular glacier, like varying pH levels. Collected data suggest, that seeding of glacial surfaces with Polaromonas cells transported by various means, is of greater efficiency on local than global scales. Selection mechanisms present of glacial surfaces reduce the deposited Polaromonas diversity, causing subsequent adaptation to prevailing environmental conditions. Furthermore, interactions with other supraglacial microbiota, like algae cells may drive postselectional niche separation and microevolution within the Polaromonas genus

In vitro characteristics of Lactobacillus spp. strains isolated from the chicken digestive tract and their role in the inhibition of Campylobacter colonization

Campylobacter jejuni/coli infections are the leading cause of bacterial diarrheal illnesses in humans. Many epidemiological studies indicate that improperly prepared meat from chickens that carry a high load of Campylobacter in their intestinal tracts is the key source of human infections. LAB, mainly members of the Lactococcus and Lactobacillus genera, increasingly have been tested as vehicles for the delivery of heterologous bacterial or viral antigens to animal mucosal immune systems. Thus, the objective of this study was to isolate, identify, and characterize Lactobacillus spp. strains isolated from chickens bred in Poland. Their ability to decrease the level of bird gut colonization by C. jejuni strain was also analyzed. First, the influence of the different chicken rearing systems was evaluated, especially the effect of diets on the Lactobacillus species that colonize the gut of chickens. Next, selected strains were analyzed in terms of their anti-Campylobacter activity in vitro; potential probiotic traits such as adhesion properties, bile and low pH tolerance; and their ability to grow on a defined carbon source. Given that improperly prepared chicken meat is the main source of human infection by Campylobacter, the selected strains were also assessed for their ability to inhibit Campylobacter colonization in the bird's intestine. These experiments revealed enormous physiological diversity among the Lactobacillus genus strains. Altogether, our results showed that L. plantarum strains isolated from the digestive tracts of chickens bred in Poland displayed some probiotic attributes in vitro and were able to decrease the level of bird gut colonization by C. jejuni strain. This suggests that they can be employed as vectors to deliver Campylobacter immunodominant proteins to the bird's immune system to strengthen the efficacy of in ovo vaccination

In vitro and in vivo studies on biocompatibility of carbon fibres

In the present study we focused on the in vitro and in vivo evaluation of two types of carbon fibres (CFs): hydroxyapatite modified carbon fibres and porous carbon fibres. Porous CFs used as scaffold for tissues regeneration could simultaneously serve as a support for drug delivery or biologically active agents which would stimulate the tissue growth; while addition of nanohydroxyapatite to CFs precursor can modify their biological properties (such as bioactivity) without subsequent surface modifications, making the process cost and time effective. Presented results indicated that fibre modification with HAp promoted formation of apatite on the fibre surface during incubation in simulated body fluid. The materials biocompatibility was determined by culturing human osteoblast-like cells of the line MG 63 in contact with both types of CFs. Both tested materials gave good support to adhesion and growth of bone-derived cells. Materials were implanted into the skeletal rat muscle and a comparative analysis of tissue reaction to the presence of the two types of CFs was done. Activities of marker metabolic enzymes: cytochrome c oxidase (CCO) and acid phosphatase were examined to estimate the effect of implants on the metabolic state of surrounding tissues. Presented results evidence the biocompatibility of porous CFs and activity that stimulates the growth of connective tissues. In case of CFs modified with hydroxyapatite the time of inflammatory reaction was shorter than in case of traditional CFs

Genome Sequence of the Probiotic Strain Lactobacillus rhamnosus (Formerly Lactobacillus casei) LOCK900.

Lactobacillus rhamnosus LOCK900 fulfills the criteria required for probiotic strains. In this study, we report a whole-genome sequence of this isolate and compare it with other L. rhamnosus complete genome sequences already published

Genome Sequence of the Probiotic Strain Lactobacillus rhamnosus (Formerly Lactobacillus casei) LOCK908.

Lactobacillus rhamnosus LOCK908, a patented probiotic strain (Polish patent no. 209987), was isolated from the feces of a healthy 6-year-old girl. Here, we present the complete genome sequence of LOCK908 and identify genes likely to be involved in the biosynthesis of exopolysaccharides (EPSs)

Kontrola bakteriologiczna urządzeń dozujących wodę po zastosowaniu zabiegów mycia i dezynfekcji

Przeprowadzono bakteriologiczne analizy wody pobieranej z urządzeń dozujących (dystrybutorów) opakowań o pojemności powyżej 5 litrów. Celem bada było określenie skuteczności zabiegów mycia i dezynfekcji w zależności od typu urządzeń. Próbki pobierano po przeprowadzeniu zabiegów mycia i dezynfekcji dystrybutorów. Woda w butli z dozownikiem stanowi integralny produkt oferowany klientom. Na końcową jej jakość wpływa więc czystość wody w opakowaniu oraz czystość urządzenia dozującego. Ze względu na budowę dystrybutory podzielono na dwa typy: I – urządzenia rozbieralne, w których wymiana części mających kontakt z wodą jest łatwa do wykonania, II – urządzenia nierozbieralne. Ustalono parametr oceny skuteczności zabiegów mycia i dezynfekcji urządzeń. Wykazano, że różnice w budowie określają metodę skutecznej dezynfekcji. Wszystkie urządzenia typu pierwszego po jednokrotnej dezynfekcji podawały niezmienioną pod względem bakteriologicznym wodę. Aby uzyskać podobny efekt w urządzeniach typu II, konieczne było powtórzenie zabiegu dezynfekcji. Z powodu wykrycia w wodzie z urządzenia po dezynfekcji bakterii z grupy coli i Psudomonas aeruginosa, z 308 urządzeń typu II do powtórnego zabiegu przekazano 99. Wykazano, że sposób wykonania zabiegu mycia i dezynfekcji jest uzależniony od konstrukcji urządzeń dozujących.A series of bacteriological analyses of water collected from distributors applied to dose water from containers of more than 5 litres volume. The objective of the laboratory studies was to determine the washing and disinfection efficiency with regard to a special type of the system used. Water samples were collected after the completed cleaning and disinfection of the distributors. Water in the bottle and a distributor constitute one integral unit offered to customers. Thus, the final water quality is, in fact, influenced by the two factors: purity of water in the container and distributor’s cleanness. With regard to the structure of the distributors, they can be divided into two types. The first type comprises distributors, in which the exchange of the elements directly contacting water is easy to perform, and the second type: devices in which the replacement of spare parts is impossible. A parameter called evaluation efficiency of the cleaning and disinfection procedures was set. It was proved that some differences in the structure of the distributors determine the selection of an efficient disinfection method. Distributors of the first type were disinfected once, and after this treatment they distributed water of no microbiological changes. As for the distributors of the second class, it was necessary to disinfect them twice in order to obtain the same effect as the single disinfection treatment of the first class distributors. 99 distributors of the second class, out of totally 308 distributors checked, needed to be disinfected for the second time because water from them contained coli bacteria (Psudomonas aeruginosa). The investigation performed shows that the method of washing and disinfecting distributors depends on the structure of the distributors